RNA id: TU2144817


Basic Information

Item Value
RNA id TU2144817
length 669
RNA type TUCP
GC content 0.57
exon number 5
gene id LOC110503133
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 48637596 ~ 48641914 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaaaaaAGGACCCAGGTGGTTAGTCACTAGCTCTGGACGTAGTTTTGAGTCTAACAagtggGGGTTACGACGTGGACCTGTTTGTGGACGGTCCAGACTATGACCTGCTCTGCACCATCTGTAGAGCTGTCCTGAGGTGTCCTGTCAGAGTGGCCTGTAACCATGTCTTCTGCAAGACCTGCATCCTACAGTGGCTCAGGAGACAGGAGACATGTCCCTGCTGTAGGAACACTATCAGTCCCAGCTTTATGTTCGTCATGTACAAATTGAGTAAAACTATCAGCCGCCTCAGGATTAAGTGTAACAACGAGGGATGCTCAGCCACTTTCCCTCTGTCTGAGGAGTTCCTCCATAGTTCCTCCTGCCAGTTCCAGAGGGTCCCATGCCCCCACCAGGGCTGTGGTTCCTTGGTGCCCCGCTcagccctggaggtccactcaCAGCACTGCCAGCACTGGAGCCAGCTCTGCCCCATGGGCTGTGGTACTCTGCTCACACAGGCCACCCAGCCCCAGCACAACTGCTTCAGGCAGCTGAGGCAGCATGTGGAGGCCCAGAGGCAGAGTCACAGAGCCATCGCTAGCGCCCTCCGGAGAAAGATGGGGAGAATGCAGACCGCCATGACACACGTCAGGAGGCAGGTGGCGCTCATCTGTGAGAGCCTAGAGg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2144800 lncRNA downstream 21578 48615457 ~ 48616413 (-) True G1874758
TU2144797 lncRNA downstream 28819 48608956 ~ 48609172 (-) True G1874756
TU2144345 lncRNA downstream 130733 48502391 ~ 48507258 (-) True G1874343
TU2144343 lncRNA downstream 139417 48497942 ~ 48498574 (-) True G1874341
TU2144340 lncRNA downstream 147061 48490617 ~ 48490930 (-) True G1874338
TU2144786 lncRNA upstream 70309 48712180 ~ 48715028 (-) True G1874745
TU2144851 lncRNA upstream 77736 48719607 ~ 48719877 (-) True G1874805
TU2144853 lncRNA upstream 82435 48724306 ~ 48724530 (-) True LOC110503134
TU2144854 lncRNA upstream 83761 48725632 ~ 48726067 (-) True G1874808
TU2144855 lncRNA upstream 85552 48727423 ~ 48727736 (-) True G1874809
XM_021581248.2 mRNA downstream 43123 48562471 ~ 48594868 (-) True LOC110502904
XM_021581247.2 mRNA downstream 93644 48537892 ~ 48544347 (-) True meiob
XM_021581246.2 mRNA downstream 103857 48531380 ~ 48534134 (-) True LOC110502902
LOC110502901 mRNA downstream 109689 48520686 ~ 48528302 (-) False LOC110502901
XM_036960666.1 mRNA downstream 162635 48443469 ~ 48475356 (-) False LOC110503131
XM_036960675.1 mRNA upstream 9305 48651176 ~ 48658033 (-) False LOC110502905
XM_021581249.2 mRNA upstream 9305 48651176 ~ 48658045 (-) True LOC110502905
XM_021581256.2 mRNA upstream 44668 48686539 ~ 48696327 (-) True LOC110502909
XM_036960673.1 mRNA upstream 78189 48720060 ~ 48724580 (-) False LOC110503134
XM_036960674.1 mRNA upstream 87735 48729606 ~ 48838648 (-) False LOC110502911
TU2144319 other downstream 116319 48520679 ~ 48521672 (-) True LOC110502901
TU2143011 other downstream 1378058 47257593 ~ 47259933 (-) False G1873183
TU2142821 other downstream 1558201 47067908 ~ 47079790 (-) False LOC110502870
TU2142808 other downstream 1676338 46960622 ~ 46961653 (-) True G1873043
TU2142791 other downstream 1695534 46941286 ~ 46942457 (-) True G1873030
TU2144859 other upstream 87741 48729612 ~ 48737282 (-) True LOC110502911
TU2145415 other upstream 662648 49304519 ~ 49307135 (-) False G1875310
TU2146049 other upstream 1139741 49781612 ~ 49846328 (-) True LOC110503141
TU2146182 other upstream 1409420 50051291 ~ 50052791 (-) True G1875984
TU2146264 other upstream 1570179 50212050 ~ 50214504 (-) False LOC110503025

Expression Profile