RNA id: XR_005039229.1


Basic Information

Item Value
RNA id XR_005039229.1
length 2212
RNA type mRNA
GC content 0.44
exon number 7
gene id LOC110502914
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 49254856 ~ 49283890 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCCAGTTTCCTCAGGATAGACGACAGCAGGTCTCTCAACCAGGGGGGTTGAGGAATGACAAAaacatcctctccctccatacctgccCCCGGCCATGGCCTTGTCCCCTCTCCATGCTCCGACGCTTTTTGCAGGAAGGCCAGGTTTCCTgtgtgatggaggagagggggatgagggagaggggaagagggatgcGACGGCTGGGCTTGTGCACGTAGAGATGGTACAGATTGACTTTATGTTTTAGCTGTGTGTGGATGTTGTTGTGTTATGTCGTTTTCTGCGCAGGTGCAGCTTGATGAGATCCATGAAGACAAGATGCAgcagtggaggaggtggaggaaagaCAATGGGACTAAGAACCAGAGCAGCCTTCTTCTACATGAACAAACATGTTGcaggagaagaggaggatggggggAGAATAGTGGAGGGGAGTGGAGTCTTCTACATACACAACCCTCTACACAGCAGTGTCTTATTTCCTGGATTACTGACCCACTGAATGTGGCCCTGGCTCAAATCACAAGACTTACTTCACTTCAGAGAATGAGTttgctgtttcctgtctttggaTGGACCCTGATCTTATTGGCTACCGAAAAGGGGTGTGGTCGTTGTGGAGCAAACTaatgagagagaacagtgGCATGAAGACTTTCAGTGCTGTCTCTCCTCAGGTGAGAGGGTCCCCCAGGCCAGTCTTTTCGCCCCCCATTGCAACCTTGCCATCCCCCAGCCCTGCATCATCAGAAAGGGACGAACCAGGACATGGGAGGAATGTGTCTTTCTTTGATGATGTCACTGTCAATGTGTTGGATCAGGATTCACCGCTGGGGATAAGAAGACTAAgtgttgtcatgactgtcctgatcaggtcaggttacaggagaacacaaccctacagattatctctcaaccccaacagaggaggagagatctaggggtctgaagatgagTATTATGACCCCTCACACCCCTGGATCCACCGCTGGGAAAGGAAGACTAAGTGTGTTTGCTGAATGAAGACAAACACCCAAATAAACAGAAGAGTTCAACAGTGGGACCTTGCTGTTTCACCGCTAGTGAACACTACACATTCTCCCTTTACAATTTATAGACCAGGGGTCCAACTACAGGGGTGTAAACCATCCCTTTTCAAGTTGCTGTACCACCAAGAGTCAGTTGTTGACCTTTCAGGGCTATGTCTGCCTGTATCCCAATAAGAATTAGTCTAGAACACATTAACAGTAACAGAGGGGTCTGATGACCACAACATAACAACAAGGATTAGTCTAGAACACATTAACAGTAACAGAGGGGTCTGATGACCACAACATAACAACAAGGATTAGTCTAGAACACATTAACAGTAACAGAGGGGTCTGATGACCACAACATAACAACAAGGATTAGTCTAGAACACATTAACAGTAACAGAGGGGTCTGATGACCACAACATAACAATAAGGATTAGTCTAGAACACATTAACAGTAACCGAGGTGTCTGATGACCACAACATAccataacataacacacacacactgagatgtGAATGCAAATAGAAAAATAAACAGTTAAAATAGATTAACCAACATAAAAAATCATGTTATATCCCTCTGACAATTAATGGGCAGGTGCAACAAGTGGACTGACATGTGGAAAGCCTCTACTTGATTTTGACAAAGTGCAGTTttagccctgtttatacctgctTCTAACAGTCTTGAGCATGTCCACATTCTCATTGTGATCTAATTGTGATATTATCTTCCTGACCACCTCCAGAGCGGTTTTTCAAATAATTTGCATAATTTGCATACAGGGAGGGACCATGATATCTGGTCACAATGTGGACAAAGTGGACGGAGAAGAGACACATTTATGCAGTGGCAtaaagtactgaagtaaaaaatactttaaagtactacatcagtcattttttgggggtatctgtactttactatttatatttttgacagcttttacttttacttcatttcattcctaatgaaaataatgtactttttactccatacgttttctctgacacccaaaagtactcgttacattctGAATACTTagaaggacaggaaaatggttatccctactgcctctgatctggcggattcactaaacacaaatgcttcatttgtaaatgatgtctgagtgctgGAGCTGGAGTAAAGAGTAAGAGTAAATAAATAATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2145386 lncRNA downstream 11324 49241535 ~ 49243532 (-) True G1875284
TU2145370 lncRNA downstream 14653 49228833 ~ 49240203 (-) False G1875272
TU2145371 lncRNA downstream 14653 49238598 ~ 49240203 (-) True G1875272
TU2145367 lncRNA downstream 28138 49226267 ~ 49226718 (-) True G1875269
TU2145142 lncRNA downstream 37519 49213570 ~ 49217337 (-) True G1875080
TU2145418 lncRNA upstream 20636 49304519 ~ 49307135 (-) True G1875310
TU2145465 lncRNA upstream 48656 49332539 ~ 49333029 (-) True G1875335
TU2145472 lncRNA upstream 55920 49339803 ~ 49340067 (-) True G1875342
TU2145474 lncRNA upstream 57060 49340943 ~ 49341631 (-) True G1875344
TU2145482 lncRNA upstream 63178 49347061 ~ 49347300 (-) True G1875349
XM_021581475.2 mRNA downstream 499 49243723 ~ 49254357 (-) True LOC110503138
XM_021581427.2 mRNA downstream 98705 49150762 ~ 49156151 (-) True tmem130
XM_021581426.2 mRNA downstream 108898 49141876 ~ 49145958 (-) True LOC110503068
LOC110503135 mRNA downstream 116608 48965278 ~ 49138248 (-) True LOC110503135
XM_036960674.1 mRNA downstream 416208 48729606 ~ 48838648 (-) False LOC110502911
XM_021581266.2 mRNA upstream 75927 49359810 ~ 49372870 (-) False rsph10b
XM_021581263.2 mRNA upstream 75927 49359810 ~ 49372871 (-) False rsph10b
XM_021581264.2 mRNA upstream 75927 49359810 ~ 49372871 (-) False rsph10b
XM_021581265.2 mRNA upstream 75927 49359810 ~ 49372872 (-) False rsph10b
XM_021581267.2 mRNA upstream 75927 49359810 ~ 49372872 (-) True rsph10b
TU2144859 other downstream 517574 48729612 ~ 48737282 (-) True LOC110502911
TU2144817 other downstream 612985 48637991 ~ 48641871 (-) True LOC110503133
TU2144319 other downstream 733184 48520679 ~ 48521672 (-) True LOC110502901
TU2143011 other downstream 1994923 47257593 ~ 47259933 (-) False G1873183
TU2142821 other downstream 2175066 47067908 ~ 47079790 (-) False LOC110502870
TU2145415 other upstream 20636 49304519 ~ 49307135 (-) False G1875310
TU2146049 other upstream 497729 49781612 ~ 49846328 (-) True LOC110503141
TU2146182 other upstream 767408 50051291 ~ 50052791 (-) True G1875984
TU2146264 other upstream 928167 50212050 ~ 50214504 (-) False LOC110503025
TU2146732 other upstream 1171438 50455321 ~ 50455709 (-) True G1876460

Expression Profile