RNA id: TU2145630


Basic Information

Item Value
RNA id TU2145630
length 413
lncRNA type sense_over
GC content 0.49
exon number 1
gene id LOC110502932
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 49591993 ~ 49633864 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGCGAGGCAAGGGGGGAACGCTGAAGGGAGATGGGGTTACCCCGGACAGCTCTGCCCTCTGGGAGTACTGATCCAGGACTACATGGGGACCACTCTCCTACCCTGCTGGATGTAGAGGTTACCCCCAAGTACAGATCAAGGATCAGATTGGGGCAGATTACCCCAATGACCTAagcggcagtgtagcctagtggttagagtgttggactagtaaccgaaaggttgcaagttcaaatccctgagctgacaaggtacaaaatctgtcattctgcccctgaacaaggcagttaacccactgttcctaggctgtcattgaaaataagttcttaactgacttgcgtagttaaataaataagCTTAATGAATAGATTGGTACCAGTAGTTAGTGGCAACCTCTGCCCTCTCCCATAGG

Function

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0030674 protein-macromolecule adaptor activity molecular_function
GO:0051015 actin filament binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2145629 lncRNA downstream 133 49592591 ~ 49592868 (-) False LOC110502932
TU2145626 lncRNA downstream 3087 49589671 ~ 49589914 (-) True G1875479
TU2145622 lncRNA downstream 11267 49581524 ~ 49581734 (-) True G1875475
TU2145621 lncRNA downstream 12076 49580709 ~ 49580925 (-) True G1875474
TU2145600 lncRNA downstream 17491 49575266 ~ 49575510 (-) True G1875455
TU2145641 lncRNA upstream 27161 49620574 ~ 49620777 (-) True G1875493
TU2145658 lncRNA upstream 56694 49650107 ~ 49650325 (-) True G1875510
TU2146022 lncRNA upstream 57737 49651150 ~ 49682331 (-) True G1875843
TU2146045 lncRNA upstream 108863 49702276 ~ 49702480 (-) True G1875866
TU2146051 lncRNA upstream 115977 49709390 ~ 49710801 (-) True G1875872
XM_036960726.1 mRNA downstream 5066 49584476 ~ 49587935 (-) True birc5a
XM_021581282.2 mRNA downstream 5246 49584476 ~ 49587755 (-) False birc5a
XM_036960727.1 mRNA downstream 9117 49570041 ~ 49583884 (-) True LOC118943894
XM_021581286.2 mRNA downstream 69139 49513316 ~ 49523862 (-) True LOC110502939
XM_036960699.1 mRNA downstream 115640 49427022 ~ 49477361 (-) True LOC110503140
XM_036960706.1 mRNA upstream 138708 49732121 ~ 49843237 (-) False LOC110503141
XM_036960704.1 mRNA upstream 138708 49732121 ~ 49846392 (-) False LOC110503141
XM_036960707.1 mRNA upstream 138708 49732121 ~ 49846392 (-) False LOC110503141
XM_036960705.1 mRNA upstream 138708 49732121 ~ 49855083 (-) False LOC110503141
XR_005039235.1 mRNA upstream 352431 49945844 ~ 49967035 (-) False LOC110502943
TU2145415 other downstream 285866 49304519 ~ 49307135 (-) False G1875310
TU2144859 other downstream 855719 48729612 ~ 48737282 (-) True LOC110502911
TU2144817 other downstream 951130 48637991 ~ 48641871 (-) True LOC110503133
TU2144319 other downstream 1071329 48520679 ~ 48521672 (-) True LOC110502901
TU2143011 other downstream 2333068 47257593 ~ 47259933 (-) False G1873183
TU2146049 other upstream 188199 49781612 ~ 49846328 (-) True LOC110503141
TU2146182 other upstream 457878 50051291 ~ 50052791 (-) True G1875984
TU2146264 other upstream 618637 50212050 ~ 50214504 (-) False LOC110503025
TU2146732 other upstream 861908 50455321 ~ 50455709 (-) True G1876460
TU2146797 other upstream 1172617 50766030 ~ 50770262 (-) False G1876522

Expression Profile