RNA id: XM_021581279.2


Basic Information

Item Value
RNA id XM_021581279.2
length 1819
RNA type mRNA
GC content 0.50
exon number 10
gene id LOC110502930
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 49975399 ~ 49986890 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACCTCGGTAGCTCGGACGGGGCTGTTACTGAATAGTCCGTTGTCTCGAAAGGTACAGTGCGCTCGTCGGAACTTAATACAGATTTCATCCGGTTAGGAATGTAAATTGTTATGTAGAGTTTGGTAAAAAGAGAAGTAAACGTGCATTTTTCATGACAGAGTCATAACCTGTCATTCCTACCTTGAATCATTCCTAAGGTTTGTGAAATCCTTTGGTGTCCTTGGAATAAGTGAACGATGTTACCCTCTCTGCAAAGTGCATCTCCAAGACTCCCTCCCCTGCTGGACAGTCACAGTCAGTGTGAGGAGAATGATGAGACAATGAGTGACGTATCCATATCTAGTGCCATACGCTTAAGACCCCATAGTCAACTCAATTATCCAGAAGTCCTCAGCCAGAGCAGGATGGCCAATAGAGAGCCACACGGCAGCCAAGAAGAACCACCGTCAAGATCCAGCCCAAACTGGCCACCCCAGGGACTATGTGCTGGCTACAGCCCCCAGATACCCTACCCCGGACAGGAAGAGATGTGTCTGAGTGCCCTGGACCACCAGAGGTACGCCTGGCTGAAATCCAGCTTTGCCAACAGCAGCGACGGACGCACTGGAGGGCCATACCCAGACAGCCTGCCATCCTACTCATACCCACACTGTGCAGACTTTGCCAGTTGCCCAGTAGAGGAGGGCCATCATCACCAGGGTAAATCCCACCACTCACTCCCTGGGCAATACAGCCCCAGCATCAGTAGCCTGGAGCAGCCgtactctctgctctcctgcccACCAGAGGCTGCCCTCCGCTACCCTTTCCTTCCCCCGTACCCCTACCCAACTCAGGGCCCGGTCTGCTGTGCACAGTGCCCTGCACAGGGGCTCGGAATGGGCCCTGTCCTACAGCTCGTTCCAAGGCCAAGTTACCGTCCACCCTACTATGGTCCGGACCACTGCAGACATCAAGATGCAGCTGGCACCACTCAAAGTGAGAGCTTTGTCCCCCAACACAGACAAAGTGACAGACctgggagtagtacacagctgtCATTGGAGCAAAgaAAGGTCTTTGTCACCTATGAGAGAGACAGCGACAACCATTTTAAAGAGACCATGAACTTTGTTTCCCTGCTGCGTCACAACGGCTTTGACACTAGTGTGGATGTATTTGAGCAGCAGCTCATAAGTATTAGCGCCATTGACTTCATGGAAAAATACATCAATGAGAAATATTACCTTATCATCATTGTTATCAGTCCCAAGTATCATGAGACCGTAACGGGGGCTAATATCCATATGGAGAAAGACGAGAGGATGTTACACACAGTCTATATCTATAAGCAGCTGCAGAATGAGTTCATTCAGAATGGATGCCAGAACTTCAGAttcattcccatactgtttccAGGAGCTAAAAAGTGCCATGTTCCTGCCTGGCTCCAGAACACTCTAGTCTACACCTGGCCAAAGGACAGAGACGACATCCTACGTCGACTGATGAGAGTGGAGAAGTACAACCCTCCGCCTGTTGGGGAGCTACCCACCatcgtctccacccccctctagaACCACAGCCTGTTGGGTTTACTTTACAGTGAAGTCCAGTCATGCTGTTTTTCCATCAGGACTGGGTCCTAATCCCAGCCTTTTTTGGGGTGAAGGCACTAGTGTTATTCTAGGGAATTTGTGTTTCCATAGCTATGGCTGAGTGACTCTTTAAGTTGTGTAGCACATAATCAACAACCTCTGAATACTCTTGTCTTTTGGGAACATCTGTTGCAGTATTCTGCCCAGGGAGGTTGcaataaattggatttgattgATATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2146183 lncRNA downstream 8389 49965036 ~ 49967010 (-) True LOC110502943
TU2146158 lncRNA downstream 44930 49929715 ~ 49930469 (-) True G1875968
TU2146147 lncRNA downstream 69977 49905082 ~ 49905422 (-) True G1875960
TU2146145 lncRNA downstream 72670 49902500 ~ 49902729 (-) True G1875958
TU2146142 lncRNA downstream 83616 49891569 ~ 49891783 (-) True G1875955
TU2146213 lncRNA upstream 23104 50009993 ~ 50010193 (-) True G1876007
TU2146212 lncRNA upstream 23523 50010412 ~ 50019792 (-) True LOC110502940
TU2146218 lncRNA upstream 33341 50020230 ~ 50020438 (-) True G1876012
TU2146219 lncRNA upstream 34256 50021145 ~ 50021488 (-) True G1876013
TU2146221 lncRNA upstream 35875 50022764 ~ 50022974 (-) True G1876015
XR_005039235.1 mRNA downstream 8364 49945844 ~ 49967035 (-) False LOC110502943
XR_002470397.2 mRNA downstream 8364 49964152 ~ 49967035 (-) False LOC110502943
XM_036960705.1 mRNA downstream 120316 49732121 ~ 49855083 (-) False LOC110503141
XM_036960704.1 mRNA downstream 129007 49732121 ~ 49846392 (-) False LOC110503141
XM_036960707.1 mRNA downstream 129007 49732121 ~ 49846392 (-) False LOC110503141
XM_021581287.2 mRNA upstream 23487 50010376 ~ 50019791 (-) False LOC110502940
XM_021581274.2 mRNA upstream 38805 50025694 ~ 50029688 (-) False LOC110502925
XM_036960715.1 mRNA upstream 38805 50025694 ~ 50042834 (-) False LOC110502925
XM_036960714.1 mRNA upstream 38805 50025694 ~ 50043368 (-) True LOC110502925
XM_036960719.1 mRNA upstream 65945 50052834 ~ 50067792 (-) True LOC110502931
TU2146049 other downstream 129071 49781612 ~ 49846328 (-) True LOC110503141
TU2145415 other downstream 668264 49304519 ~ 49307135 (-) False G1875310
TU2144859 other downstream 1238117 48729612 ~ 48737282 (-) True LOC110502911
TU2144817 other downstream 1333528 48637991 ~ 48641871 (-) True LOC110503133
TU2144319 other downstream 1453727 48520679 ~ 48521672 (-) True LOC110502901
TU2146182 other upstream 64402 50051291 ~ 50052791 (-) True G1875984
TU2146264 other upstream 225161 50212050 ~ 50214504 (-) False LOC110503025
TU2146732 other upstream 468432 50455321 ~ 50455709 (-) True G1876460
TU2146797 other upstream 779141 50766030 ~ 50770262 (-) False G1876522
TU2146796 other upstream 779207 50766096 ~ 50770262 (-) False G1876522

Expression Profile