RNA id: XM_021581274.2


Basic Information

Item Value
RNA id XM_021581274.2
length 2807
RNA type mRNA
GC content 0.50
exon number 7
gene id LOC110502925
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 50025694 ~ 50043368 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACATTATTTTTATTGATTTTAAATCAATTATTGGGGGGATGAATCGACCTGTTCTGAATGTTGTGGGGGGACATATCTCCCCTGCCAATTACAAGCATCATTTACTTTACTTTTCTATGAACTGTGATACCTTTTCAAAAAGTGATTTATTGCCCACCTTCCCTACAGAATCGCATGCTCCATCCATGACAGTGTGGGGGTCCAGAGTGAAGCGCTGCATGGGGCCTATCGTCTACACAGCTCCCCCAGATGGTGGCTGGGGCTGGGTGGTGGCGGTCTCCTTCTTCCTGGTGGAAGTGTTCACCTACGGAGTCATCAAGAGCCTGGGCATCTTCCTCCAGGACCTGATGGGGGAGTTTGGGGAGAGCAACAGCCGAGTCTCTTGGATCATCTCCATCTGTGTCTTCGTCATGGCCTTCACTGCTCCTCTCGCTTCTGTGATGACCAACCGGTTTGGCTTCCAGACAGTTGTTATGATTGGTGGACTCCTCATCTCCATAGGAACCATCGCCAGTGGCTTCACCAAATCCATCAACGAGATGTACATCACCATCGGACTCGTTGCAGGTCTGGGGTACTGTCTGACCTTCTTGCCCACCATTACTCTCCTGTCCCAGTACTTCTCCCACCGACGCTCCCTGGTCACAGCTGTCGCCTCCACAGGAGAGTCCTTCTCTGTGTTCACGCTCGCCCCAGCCTTCTCTGCTCTAAGGGACTGTATCGGCTGGCGTTACACCCTGGTGGTGATCGGAGCTCTACAGGGCATCATCATCATCTGTGGAGTTCTGCTAAGACCCATCATCATCAGACCTGGACCAGCCACGGAGAAAGAAACTGATGGACTGGCTGACAAAGAGCTGAAGGCTCTGAACACAGAGGAGGAGTACTACAGTAAGGAGAGGTTGTACACTAAGGGCAGTTCATATGTTAAGGATGGGTCTTACACACTGCAGAGGGATAGCAAGCTGGCTCATCGTTACTCCCTGAGCTCTGGAGAGTCTGTAAACTCTGAAGTTCAGTCCCTCCATCACCAGGTCCTGGAGGACGGCAGTAAGGcaggggaggagatagaggaggaggaggcgtcTTCACAGAGGTGCTTAGGAAGcaaggagaaggagatggagaaggaCGAGGAGACGGAGGAGAAGGATGAGAAGCAGACACAAACACTATCCCCCCAGAAACTCCTTGACTTCTCCATGTTAAGAGAAGGCAGCTTCATCTGCTACGCTCTCTTCGGCCTTTTTGCCACATTGGGTTTCTTCGCCCCTCAGCTCTACATCATCGAGCTGAGTGTGAACCGTGGCGTGATGCGTCACCGCGCCGCCCACATGCTCTCCGCCATGGCCTTTGCCGAGATCTTCGGCCGCCTCTCCATTGGTTGGGTGCTAGGCAGGAAGCTGTTCAGAGGCAGGAAGCCCCTGGTGCTGCTGGGATGTGTAGTTCTGCTGTGCCTGGTGCTGGTGGCCTTTACCCTGGTGTGGGAGTTCTGGGGCCTGGCCGTGTGTTGTGGGTTCTATGGGTTTTTTATAGGCACCGTGTCGTCGACACATATACCCATGCTGGCAGAGGAGGATGTGGTGGGCATAGAAAGGATGTCGTCAGCTGTGGGGGTCTATGTGTTTATACAAAGTTTCGCTGGGCTGGCGGGACCACCTCTGGGAGGTGTTCTTGTGGACCTGACTCAGAACTACGGCTCAGCGTTCTACTCCTGTGCGGTGGGAATGAGTCTAGGGGCTGTGTTCCTGGGTCTGGTACGACCAGCGAAGAGAGGCCTGCTCTGCTGCAGCACAACCAGgcctcagagcatttcgtattattctaataatacgaagtgctctgagaccaggttgtacAGCAGGAGGGGGGATCAGAACCTCCCAGAACCCATGCAGGTGGGGCCGGGGAACCCTGTACCTCAGCGAGAGGGGAAGGAGGCCCAGGACAGAGACAGTCCTCAGGACTTCCTAGAAGTTAACCTTGATTTGGACCAGAAAACGTTACTGAAAAAGGCCAACAGATGACAATCTCTACTTGAAAAGACATCACAAAGATCTGGTTTTGGGTGTCTGGAGAGTGGCTCACACTGAACAAAGGaaatcccaatcacggccggttgtgatacagcctgaaatcgaaccagggtgtctgtagcgacgctgaaatgcagtgccttagactgctgcgccacacGGGAGCCCATGAACATGAACATGGCTCATGGTATTGTAAGAGAGGATACAAACAATATGTAGATACATGAAGTCAGCTGTGAAGAAACAATAACACCATGACATCATGTTGTATTCAATTACTTTTTAAACTTCACTTTACATTTTTTAGACAAAGCAATCACTTGGTACTAATAAAACATAAATATCACAATAATGTGTAAAGTCATTGAAGTGCTTTGAATAGAAATGTACATTCTAGGATCTTCCTCTCATCCTAGTGTATATTCATAAATCATATACATTTCCTGATTGTGACCATTCTAGAATTTAGAGGTAAATCTGGAGATTCTATTATCTCCAGACACCTCCTGAGCCACTGTCTGAAGGTCTGGAAGGGCAGAGTGGGTTTGGGACAGTAGGGCTCGGAGTCTGACTAGGAGATAGTGGGCTGTCCAGGGCTAGCTGTTCCCCCCTTCTCTATCCATCGCAGCAAGGTCTGAGAGAGACGAGATATACAGtgcgtttggaaagtattcagacttttcccacattttgttatgttacagccttattcaaaaatggatgaaattgtttttttcccctcaaactacacacaataccccataatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2146221 lncRNA downstream 2720 50022764 ~ 50022974 (-) True G1876015
TU2146219 lncRNA downstream 4206 50021145 ~ 50021488 (-) True G1876013
TU2146218 lncRNA downstream 5256 50020230 ~ 50020438 (-) True G1876012
TU2146212 lncRNA downstream 5902 50010412 ~ 50019792 (-) True LOC110502940
TU2146213 lncRNA downstream 15501 50009993 ~ 50010193 (-) True G1876007
TU2146222 lncRNA upstream 763 50030451 ~ 50030675 (-) True G1876016
TU2146223 lncRNA upstream 2111 50031799 ~ 50032017 (-) True G1876017
TU2146227 lncRNA upstream 15945 50045633 ~ 50045943 (-) True G1876021
TU2146186 lncRNA upstream 19179 50048867 ~ 50049071 (-) True G1875988
TU2146175 lncRNA upstream 47835 50077523 ~ 50080699 (-) False LOC110502926
XM_021581287.2 mRNA downstream 5903 50010376 ~ 50019791 (-) False LOC110502940
XM_036960720.1 mRNA downstream 38804 49975399 ~ 49986890 (-) False LOC110502930
XM_036960721.1 mRNA downstream 38804 49975399 ~ 49986890 (-) True LOC110502930
XM_021581279.2 mRNA downstream 38805 49975399 ~ 49986889 (-) False LOC110502930
XR_005039235.1 mRNA downstream 58659 49945844 ~ 49967035 (-) False LOC110502943
XM_036960719.1 mRNA upstream 23146 50052834 ~ 50067792 (-) True LOC110502931
XM_021581275.2 mRNA upstream 48919 50078607 ~ 50101700 (-) False LOC110502926
XM_036960708.1 mRNA upstream 80732 50110420 ~ 50146309 (-) True LOC110503023
XR_005039168.1 mRNA upstream 161836 50191524 ~ 50194275 (-) True LOC118943861
XM_036960731.1 mRNA upstream 185380 50215068 ~ 50251381 (-) False LOC110503025
TU2146049 other downstream 179366 49781612 ~ 49846328 (-) True LOC110503141
TU2145415 other downstream 718559 49304519 ~ 49307135 (-) False G1875310
TU2144859 other downstream 1288412 48729612 ~ 48737282 (-) True LOC110502911
TU2144817 other downstream 1383823 48637991 ~ 48641871 (-) True LOC110503133
TU2144319 other downstream 1504022 48520679 ~ 48521672 (-) True LOC110502901
TU2146182 other upstream 21603 50051291 ~ 50052791 (-) True G1875984
TU2146264 other upstream 182362 50212050 ~ 50214504 (-) False LOC110503025
TU2146732 other upstream 425633 50455321 ~ 50455709 (-) True G1876460
TU2146797 other upstream 736342 50766030 ~ 50770262 (-) False G1876522
TU2146796 other upstream 736408 50766096 ~ 50770262 (-) False G1876522

Expression Profile