RNA id: XM_036960719.1


Basic Information

Item Value
RNA id XM_036960719.1
length 2747
RNA type mRNA
GC content 0.47
exon number 12
gene id LOC110502931
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 50052834 ~ 50067792 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACCAGCCAATAGAAAAGGGCACTAAAGTGACGCATCCAGCCCTCagctgtttttgtttttgtcagCCTCCTGTTAACTCTAGAAGTTAGGGTTAAAACAGAATACAAGCGCCGTGTTCTAAAATAGAAGAAACAACAAATAATTTTAGTTTCAGGATTCAAGCCATCAATTTCCAATTTGTATAGCATGTAATAACTAATCTAGTTAATCTAGTTAACTAATCTCAAGCGCATACGTGTGTAGAGGAGCTGGGTTTCGGAGTGATCGATCCGAACACAGGCCACTGAACTAGGGCAGTGGAGCAGGACAGGATAATCACTGTGGACGAGATGGAGGAACGGGAGACACCCGACGGTCCGGGAGGGCCTCAAGGCTTGATCAGCGCCTCGTTCAACCAGGACACCACgtctctATCAGTGGGCACTAAGTCAGGCTACAGACTCTTCTCTGTCACCTCAGTGGACAAGATGGACTGCATCCATGAAGGAGcgGAGTGTCCAGACGTGTACATTGTGGAGCGGTTGTTCTCCAGCAGTCTGGTGGCGGTGGTCAGTCTCTCCATGCCCCGACGTATGAACGTCTACCACTTCAAAAGGGGAACAGAGATCTGCAACTATAGCTACTCTAACAACATCCTCTCAGTCCGGCTCAACAGACAGAGGCTGGTGGTGTGTCTGGAGGAGTCAGTCTACATCCACAACATCAAAGACATGAAGCTGCTGAAGACGCTGCTCAACACGCCCCACAACCCCTCAGGTCTCTGTGCCCTCTCTGTGAACCATGGTAACTCCTACCTGGCGTACCCTGGCAGTCAAACCATCGGAGAGATCATGGTCTATGACACCAACAACCTGAGCAAGGTGACGATGATCCCAGCCCATGACAGTCCCCTGGCAGCCCTCACATTCAACGCGTCAGGAACCAAACTCGCCAGTGCCTCCGAGAGGGGTACAGTGATCAGAGTGTTCAccatcccagagggacagaggcTGTTTGAGTTCCGTAGAGGGATGAAGAGgTATGTGAGTATCAGCTCGTTGTCCTTTAGTTCAGACGCACAGTTCCTCTGTGCCTCCAGCAACACAGAGACGGTCCATATCTTCAAACTGGAACAGCACAGCCCCAGTCGAGATGGCGAGTCTCCTACGTGGGGTGCCTACGTGGGGAAGATGTTCACAGCAGCCAGCACCTACCTTCCCTCCCAGGTCTCTGACATGATGCACCAAGACCGGGCCTTTGCCACCGTACGACTCAACATGTTCGGACTCAAGAACGTATGCGCCTTGTCCACGGTTCAGAAGCTACCTCGGCTGCTGGTGGCATCATCAGATGGACATCTCTACATCTATAACATTGACCCACAGGACGGAGGAGAGTGTGTTCTGGTCAGGAAACACAGGCTATTTGAAGGAGATGAGGCGCCACAGGAAGCACAACAGGAAGAGAAGGAGTCAGAGGATGGAAGGTCCCTCCCACCCGGCCCATCATACGCTGCCACTGTGTCCCTCCCCTCGACTGCACCCTCTTCTACCACTCTCACAGGCTACTCAGAGGATGGCGGGGCTGAGAAAGGGGATGTGATCCCTGAACATGAGTTTGCCGAGGGACCCGTCTGTCTGGATGATGAGAACGAGTTTCCTCCCGTCAGCAAACAGACCAACTGACCCACCACTTCCCTGGAACCAATCAACTGGAGCCATTCACGCAAGAAGGAAGTATATCAGTGTTAAGAGAACCTCCCCCACCCCATGTCCCCAACGAGCCCATGTCCCCACCGATCAAATGGGAGAAATATAGATGCCACAGTGTTGATTGGTTACTCTAATGTGCCATTCAGAAGTAGAGTGTGGCTAGATGGACCCGTCTCTGTACATTGTCTTATACCTGGAACTAAAGGTCAGTATGAATACAATTTAAATCCATTCCCTAACTATCAGAAGGGAAGCAGGTCTGGGCTATGAATTTGTAGCCTTCCTCTAGTCTAATATTAACCAATATTTAACCTGGTTAAAAAGGGACTTTAATATTGAATTGCAATCATAGAGCTATTGAGAAGTGCTTTTTACTTTTATAATCTGTTTAGTATCATTTAGTGATTTATAACACTGACTGGATAGTGGGGTCCGAGTCGTATTCTGCTGTTTGATGCAGATTGGCTAGAACCCAGTGTAGGGTGGAAGAGGGCAAAGAGGGGCACAGACAGAGTGCGTCTTATCAGTGGGATATAGCTGTGCCACGCcccgagagagaagaggggggagggaaagaggggggagggaaagagaggggatggtggaatagagaaggagagagactgcgTTCTATCATATGTCTTGAGGTGATGTTTTTGAACTTATCTCTAGAAAAAAGGTGGGAAGAATAATAAAATACTGATAATGTGAAAAAGTTGATTAATAGTATTGTAGATCCTTATAGGTCCTTTTATTTCACTGATAAAATTATTAACACCATTGACTAAATAATGTTGAATATTGTAAAATTTCAGACATGACGTAGatgtttttactttgtaaaaAATAATGTTGACTTGTACTAAATATTATTTTGGAATATGAAATTACAATTATTCATCAATGCATAAGACCTACGGTAATTAAGTGAAGGTCTTGGCGCTAAGTGGATTATTATTgtttgtgtataatgtgtatgtatatattatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtataaatacagttgaagtcggaagtttacaaac

Function

GO: NA

KEGG:

id description
K17908 WIPI1_2, ATG18; autophagy-related protein 18

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2146186 lncRNA downstream 3763 50048867 ~ 50049071 (-) True G1875988
TU2146227 lncRNA downstream 6891 50045633 ~ 50045943 (-) True G1876021
TU2146223 lncRNA downstream 20817 50031799 ~ 50032017 (-) True G1876017
TU2146222 lncRNA downstream 22159 50030451 ~ 50030675 (-) True G1876016
TU2146221 lncRNA downstream 29860 50022764 ~ 50022974 (-) True G1876015
TU2146175 lncRNA upstream 9731 50077523 ~ 50080699 (-) False LOC110502926
TU2146176 lncRNA upstream 9731 50077523 ~ 50080699 (-) False LOC110502926
TU2146177 lncRNA upstream 9731 50077523 ~ 50080699 (-) True LOC110502926
TU2146267 lncRNA upstream 144258 50212050 ~ 50253060 (-) True LOC110503025
TU2146294 lncRNA upstream 168463 50236255 ~ 50237343 (-) True G1876076
XM_036960714.1 mRNA downstream 9466 50025694 ~ 50043368 (-) True LOC110502925
XM_036960715.1 mRNA downstream 10000 50025694 ~ 50042834 (-) False LOC110502925
XM_021581274.2 mRNA downstream 23146 50025694 ~ 50029688 (-) False LOC110502925
XM_021581287.2 mRNA downstream 33043 50010376 ~ 50019791 (-) False LOC110502940
XM_036960720.1 mRNA downstream 65944 49975399 ~ 49986890 (-) False LOC110502930
XM_021581275.2 mRNA upstream 10815 50078607 ~ 50101700 (-) False LOC110502926
XM_036960708.1 mRNA upstream 42628 50110420 ~ 50146309 (-) True LOC110503023
XR_005039168.1 mRNA upstream 123732 50191524 ~ 50194275 (-) True LOC118943861
XM_036960731.1 mRNA upstream 147276 50215068 ~ 50251381 (-) False LOC110503025
XM_036960732.1 mRNA upstream 147276 50215068 ~ 50253496 (-) False LOC110503025
TU2146182 other downstream 43 50051291 ~ 50052791 (-) True G1875984
TU2146049 other downstream 206506 49781612 ~ 49846328 (-) True LOC110503141
TU2145415 other downstream 745699 49304519 ~ 49307135 (-) False G1875310
TU2144859 other downstream 1315552 48729612 ~ 48737282 (-) True LOC110502911
TU2144817 other downstream 1410963 48637991 ~ 48641871 (-) True LOC110503133
TU2146264 other upstream 144258 50212050 ~ 50214504 (-) False LOC110503025
TU2146732 other upstream 387529 50455321 ~ 50455709 (-) True G1876460
TU2146797 other upstream 698238 50766030 ~ 50770262 (-) False G1876522
TU2146796 other upstream 698304 50766096 ~ 50770262 (-) False G1876522
TU2146794 other upstream 698397 50766189 ~ 50770262 (-) False G1876522

Expression Profile