RNA id: XM_036960708.1


Basic Information

Item Value
RNA id XM_036960708.1
length 4027
RNA type mRNA
GC content 0.54
exon number 20
gene id LOC110503023
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 50110420 ~ 50146309 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATCATTAGCCAGAGCCTGTCCCTTTGTTTGACTTACACTCTCAGACAGAAACCTGTACACACCTCCACTATTTGAGTAACATTTGGGATCTTATGCACCTCCTGATCTTGGATCTCTTCAGCCTGGTTGAGATTTCTAAGACTTCCACATGGAAAGCTTTATGGATCGGTAAACTGCAGACTGAGAGGCTTCTTTCCCTCTTCCTTCTAATGATTCACTTCTGGAGGATTACTTGTCTTGACACCCTGGTATCCATGCAGATTGTGGATAGTCTCGTCTCCTTGGTCCTCCGCTGAGGATGTGTTGACTTTCTCTCCCTGTGGTCTAACTCCTGTGATGGATGATGTATTGATCTGTGGAGCATTCCACCCTGTCTGAAAAGAAGCAGCTTTGTTTGACCTGAAATTGGATTTGTCCCGAAAgacaaagggggagagagagacaaagactcTTATTTAAAcctagaggaggggagagaggtatCAGATTGGGCTTAGGCTGTTGTGAGGTCAGTTTGTGTTTCAGCATCCTTCACTCTCTGACACATAAACAGAGGAACTTGGGCCCGGAGGTTTTGAGGGGCCCATCTGAGGCAAAGTCCAGAGGGAAGATCTAAAGCGATGAGTGAGGTTGTTTGTAAAGCTTGGTCCAGAGTGAAAATTCCCTCTGTTTAGCAACACACAATGGACTTAGCGCTAGACTAGTTTgatagacagacaggaaggtTAGGTGTGTAGGAATGGGTACCCTAAGAGGTATCAGTGATCCATGGGAGGTCTACGAAAGGGAAACCTCCAGCAGCAGCTCTTGTGATGCAGGCCAGAATGCCTGTACTCAGGAGGAACTCAAACTTAAACACCTGCTGTTACTGAGGGATGCGTTTACCCGTCACACAACCTCGGACAGGGGGTCCCAGCGGAGTTGGAGAGGTGCACGgaaaaagggaggaggagaaagagggatgagtCTGGAGGAGTTCCAGAATGCTCTGAGTGCTGTGATTGGTCCAGACAGCCAGAGCGGGTGGCTGGAGAGGGTCTTCAATGAGATTGACGTGTCATGTGATGGCTATGTGGAGTGGGAGGACCTGTGTAGCTACCTGCTGCagcagtgcagagagagagaccacacctCCAGGCCAAGAGGCGCTCTACTAGACACTGAACCACTCATCAAACACTGCTCACACAACAAGCAGGAGCCCACTATCTGTGTAGTGGCTGTTCCCCATCCTCCCCCCCTCCGCTACATCAGTGTCAGTAAGAGGGGGCTGCTCACTGTGTGGAACAACCGACTACAAGTCCTCAAGACTCTGGAGCTGGCTGGAGACCCTGCAGAGCAAGGGGTTAACAGAAGGATGTTCAGGGGCTGGACCACTGATGCTGTCTACCTGCCCAAAGTCCACAAGGTCGCCATAGCAACCAGCAGCAGGGACCTCCACTTTGTTGACGTGTCCACGGCCAGCTGCTTTGAGGACATCCACTTGTTTGGGTTCCCCAATATTCCAACCTCTCTCTGCTACTGGCATGACATAAAGTCTCCAGGGGGGCGCTCTTTGCTGCTGTGGGGAGATGAAAAGGGAGGGATCCATCTGTTGTGGTTCCTCCAACTCCAAAATGGACTGTTTGAGAGCCCCTTCACTGAGGACAATGTCCCTCAGAGGATTTACATGCAGGATATTGGTGACCACAGCCGCCTAGTCTCCTACCAACATATCCCCACAGTCCACCAGGAACCAATCAACAGGATAATTTTCGAGCCCCACACTGACCTCATCATGACATCATCAGGAAGCGACGCCTCCTCAGTAGTCATCATGCATGTGTCACTCAGGAGAAAACCCTATGTTTGGAGAATCAATAAGGGTGTGACGTGCTTTGATTTCAGCAGGTCTCTCAACCTATTGGTGACGGGTGGTCTGGACCCTGCGGTCAAACTGTGGAACTGCTTCATGACCGCTCGGCCAGTCGCGGTCCTACACGGTCACGGCACCACAGTACTGGACGTGGTCATCTACCAACCACTGGGACAGGTCCTCAGCTACTCCAAAGATGCTGAGCTGAGGGTGTGGGACATCTCCTCCAATCGCTGTCTGAGGACCGTCCACCTGCAGTTCCCCTGTCTGCAGCCAGGGCGCGCCCCAGAGCACGGCAACTTCCCTTTCCTGTTGGTGGCCCCGCCCTTCCTGTCGCAGACTCCGCCCCATATTCTGGTGTCCTGTCGAGACTACCTGGCCAGGCTGAGGCtggagaaaggggggaggggggaggagcagggagaagggggaagaggagggggaggacaatGCCATGGTGCACCCCTCTCCTGTGCTATCTACAACCCCACACTGAAACAGgtcatcGCCGGATGTGATGACTCGTCTGTATCAGTGTGGGACGTAGAAACAGGGAGGTTGCATCTGAAGATCACCAGCGctcatggagaggaggagattaCCTGCATGGCGCTAGACTCCTCCCACAGACGACTCATCACTGGCGCACGCAACGGAACCATCAAGGTGTGGAACCTACTGAATGGCCTTAACCTACAGAAGCTAGAGCCTGTCACCCTCTCAGATGTCACAGGGATCATCTGTCTCCATGACAACCAGTTGCTGGCCGTGGGGTGGAGCCAGCAGGTCGCTCAGTATGACATCAAAGGAGCTAAGGATGTGTTTGTGAGGGCAGACATGTCGTGGAAGTCAGGTCAGCAACACAGAGCTGACATCCTGGTGGTTGACCACTGCCCTGCCCTGGGAGTCATTGCTACGGGCAGCCATGATGGAGAGGTCATCGTCTGGACTTTGGACACACAGAGACCCCTGGTTCGCCTGCGGAGGGCCACTCACTCACTGACAACACCGCCTGTGGACGCGTTGCTGTTCCTGCAGCGGAGGGGTGGGGACAAACACTGGAGGAACACACCTATCCTACTCTCCTCACAGGCTGGAGGGATCTACTGGTGGAGcatcactggacacacacacactcatggTCAGTTCTATGCCCCtggtggagagaaggagtgtgtgtTGGGGCTGACTTCAGACCAGGAGAACAACATCCTGGTCACTGGAGACACAGCAGGGTGTGTTCAGGTCTGGGACATCTCTCAGTACGCGCTATGCATCACACAGGAGCCCTCCCCAAGCCACCCTCCTCTCCTGCAGTCCTGGAGGGCCCATGAGGGGGCGATAGTGAGTGTTGAGGTGCTGGTGTACACAGAGAGactcttcttcctctctggcTCTGTGGATGGGACCAGCAGAGTGTGGACGGGGGAGGGAGGGCATGTAGGTTCATTTGGACAGGAACCACAGTGGAGTCTCGCTGACCCAGCCCCTCACCACACCTCCAGAGACCAGGTAAACAACCTggctgaggaggagaaggaagaaagGGAGAAGAAGATTGAGAGTGAAAGTGACCCATCACAGAGCAGCGAGGTCACAGGTCAAACATCTGACCTTTTCAGCAGGGGTCCGGGTTCACCGGAGGAATGGATTTATGAAGGGCCTGTAGAGGAAGCCCCAACACCAGAGAACCAGACAGGGCCTGTCGGCACAGAGGAGAGCCCTGCTCCATGTCACGCTCAACACATCAGGgtGTCTCAGTGTCACCAGCTGTATGGGGGCATCCAGAGGAAGATGGcagttaagagagagaggaggcaggtatTTGGTGACATCAACGTCAATAAGCTCTTCCCCATCGGGGGCTTGTGCACGCCCTTCCAGGCCCTGGCCGTGCAGgaCTGTCAGCAGGTGTTCCTGCCGGAGGATTTACCCATGAGCCCTTGGATGCAGCGTCAGACTCTGAGTTGTGTGAGTGAAGCGGGGCTTAGCTCCCTACAGCTGTCAATCAACAGCTCAGAGCAAGAACATGAAGCCACCTGACCAGCCTCTTCCTTCtgctattctcctcctcctccttatccttctccttctcttcctcctcctcttcctccttatccttcacctccttctccttttcctctcctcctcctccacttccttctcctctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2146175 lncRNA downstream 29721 50077523 ~ 50080699 (-) False LOC110502926
TU2146176 lncRNA downstream 29721 50077523 ~ 50080699 (-) False LOC110502926
TU2146177 lncRNA downstream 29721 50077523 ~ 50080699 (-) True LOC110502926
TU2146186 lncRNA downstream 61349 50048867 ~ 50049071 (-) True G1875988
TU2146227 lncRNA downstream 64477 50045633 ~ 50045943 (-) True G1876021
TU2146267 lncRNA upstream 65741 50212050 ~ 50253060 (-) True LOC110503025
TU2146294 lncRNA upstream 89946 50236255 ~ 50237343 (-) True G1876076
TU2146295 lncRNA upstream 91133 50237442 ~ 50238234 (-) True G1876077
TU2146270 lncRNA upstream 121125 50267434 ~ 50269466 (-) True G1876052
TU2146268 lncRNA upstream 129412 50275721 ~ 50276830 (-) True G1876050
XM_021581275.2 mRNA downstream 8720 50078607 ~ 50101700 (-) False LOC110502926
XM_036960719.1 mRNA downstream 42628 50052834 ~ 50067792 (-) True LOC110502931
XM_036960714.1 mRNA downstream 67052 50025694 ~ 50043368 (-) True LOC110502925
XM_036960715.1 mRNA downstream 67586 50025694 ~ 50042834 (-) False LOC110502925
XM_021581274.2 mRNA downstream 80732 50025694 ~ 50029688 (-) False LOC110502925
XR_005039168.1 mRNA upstream 45215 50191524 ~ 50194275 (-) True LOC118943861
XM_036960731.1 mRNA upstream 68759 50215068 ~ 50251381 (-) False LOC110503025
XM_036960732.1 mRNA upstream 68759 50215068 ~ 50253496 (-) False LOC110503025
XM_036960734.1 mRNA upstream 68759 50215068 ~ 50253496 (-) False LOC110503025
XM_021581405.1 mRNA upstream 150341 50296650 ~ 50297792 (-) True LOC110503026
TU2146182 other downstream 57629 50051291 ~ 50052791 (-) True G1875984
TU2146049 other downstream 264092 49781612 ~ 49846328 (-) True LOC110503141
TU2145415 other downstream 803285 49304519 ~ 49307135 (-) False G1875310
TU2144859 other downstream 1373138 48729612 ~ 48737282 (-) True LOC110502911
TU2144817 other downstream 1468549 48637991 ~ 48641871 (-) True LOC110503133
TU2146264 other upstream 65741 50212050 ~ 50214504 (-) False LOC110503025
TU2146732 other upstream 309012 50455321 ~ 50455709 (-) True G1876460
TU2146797 other upstream 619721 50766030 ~ 50770262 (-) False G1876522
TU2146796 other upstream 619787 50766096 ~ 50770262 (-) False G1876522
TU2146794 other upstream 619880 50766189 ~ 50770262 (-) False G1876522

Expression Profile