RNA id: TCONS_00051980


Basic Information

Item Value
RNA id TCONS_00051980
length 749
lncRNA type lincRNA
GC content 0.44
exon number 2
gene id XLOC_026688
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 42212710 ~ 42216013 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTTTTCCACACAATCACCACCCACCCTGGACCACATAAGTGCCATTTGAGGGTCCTGAGATGTCGACTGGGGCCCCCTCTCCCGAGGAGGCAATTTGTTGACAGTTAACAGTGCTTCCCATGAAATGAGAGCCCATGGTCTGGTTATAACACACAGGGTGTGTAATAGAGTGGTTAATAAAAACCTTGTGGCTAATAGGTGAGGGTTTAGCATGGCCAAATTTTACCCAAAATAGAGCATCACATGTACCATTTCTAATGCCAATCCGGTATGGATCGTAGTCATCGACAATTATATATATGGGTCCTGGTACCCTGATCCTgcaaaactggcaaaacataTAGCAGCTGTTTTATTCATGGGTTTAGCATAAAGAGGGGTTTGCTTGGCTGAATGAGGCATAACAGAACATACATAACAACCAGATACATTATATGACCTAGCTAAAACTTTCACATATTGATACCACATATTATTTCAATTGGATTGTCAGCCCCATCCTCTGCCCATCCAAATTCATGATCATGTGTCCAGCGTTTCAGCCTGGCTGCATTAGCTTGAGCAACAAGAAAGAGAAACAGTCCAATTGTCCGCAGCAAAAAGGAAGTCATGCTGACCCTTGCCTTAAGGTAGACAGTGCTACGTGTTTAGCTCCCATCTGTCTCCCAAACGCAATTGTGCAGCTgtcgacccggagacatgagaagagaccaaactgtagttagaatggtttattctgcaagccTGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000155738

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053096 lncRNA downstream 7598 42183353 ~ 42205112 (-) False XLOC_026687
TCONS_00053095 lncRNA downstream 7598 42183353 ~ 42205112 (-) False XLOC_026687
TCONS_00053094 lncRNA downstream 7598 42183353 ~ 42205112 (-) False XLOC_026687
TCONS_00051979 lncRNA downstream 9105 42194210 ~ 42203605 (-) True XLOC_026687
TCONS_00053093 lncRNA downstream 9110 42183353 ~ 42203600 (-) False XLOC_026687
TCONS_00052482 lncRNA upstream 155771 42371784 ~ 42373599 (-) False XLOC_026689
TCONS_00052481 lncRNA upstream 155771 42371784 ~ 42373599 (-) True XLOC_026689
TCONS_00052483 lncRNA upstream 332931 42548944 ~ 42746784 (-) False XLOC_026690
TCONS_00052484 lncRNA upstream 465969 42681982 ~ 42746784 (-) True XLOC_026690
TCONS_00053097 lncRNA upstream 743055 42959068 ~ 42963234 (-) True XLOC_026692
TCONS_00051977 mRNA downstream 87055 42121166 ~ 42125655 (-) True XLOC_026686
TCONS_00051976 mRNA downstream 126062 42032360 ~ 42086648 (-) True XLOC_026685
TCONS_00051972 mRNA downstream 126133 41955358 ~ 42086577 (-) False XLOC_026685
TCONS_00051982 mRNA upstream 702130 42918143 ~ 42968544 (-) False XLOC_026692
TCONS_00051983 mRNA upstream 748032 42964045 ~ 42981739 (-) False XLOC_026693
TCONS_00051984 mRNA upstream 748703 42964716 ~ 42967698 (-) True XLOC_026693
TCONS_00051985 mRNA upstream 1131504 43347517 ~ 43821191 (-) False XLOC_026696
TCONS_00051986 mRNA upstream 1136543 43352556 ~ 43356082 (-) True XLOC_026697
TCONS_00051964 other downstream 900567 41312022 ~ 41312143 (-) True XLOC_026680
TCONS_00051939 other downstream 1682931 40526882 ~ 40529779 (-) False XLOC_026667
TCONS_00051938 other downstream 1682932 40526879 ~ 40529778 (-) False XLOC_026667
TCONS_00051924 other downstream 2054023 40154294 ~ 40158687 (-) True XLOC_026658
TCONS_00051921 other downstream 2123909 40088685 ~ 40088801 (-) True XLOC_026657
TCONS_00051981 other upstream 650070 42866083 ~ 42866200 (-) True XLOC_026691
TCONS_00052007 other upstream 1865610 44081623 ~ 44094226 (-) False XLOC_026707
TCONS_00052055 other upstream 4979124 47195137 ~ 47195234 (-) True XLOC_026732
TCONS_00052070 other upstream 6861749 49077762 ~ 49077879 (-) True XLOC_026748
TCONS_00052082 other upstream 7599184 49815197 ~ 49815287 (-) False XLOC_026760

Expression Profile

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