RNA id: XM_036960734.1


Basic Information

Item Value
RNA id XM_036960734.1
length 2316
RNA type mRNA
GC content 0.49
exon number 10
gene id LOC110503025
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 50212050 ~ 50253496 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTACAGGGACAGATTCATTATGCGGAAATCgatccgccatttcctggttgcaaaaatccTGATAGTTCgcttcgcctaatttcagtttgtgacaaaacaagcagtcattggATAGAGAATCAGTGTACGATCTAAACCGCTGTGGAATGTATATTTCCATAACCAATAATATTGTATATTCATCTGTTTGAAGCTGGCGTGTAAAACCGAATGTAAAAGACACAAAACGAAACTTCAGCACGGGAAGCATAGAagtagcacacatagaacagaagTACCGCTTCGTATACTTGCTTTCAATATGAATGAAATATCTATAactcatatttctatgtgaatgtgttcgattctcccaaaaagttacatattgtagcAAGGGCCAGGTCAGCATCACCAGCCAGAGGGCGCTCAGTTTCAGATGATTTTATTTTGGAGAGGAAGTTAATAGGTGGTTTGAGAGGAATCGGAGAAACATAAACCGTTTATAATCGCAATGGAAACACATGATGTTGTTTAATTCACTTGCATTTGACTTGCGGAGTGCACAGCTTGGCTACTTTGAATCGCGGTCGTATAAGCGAGCTGCTGAAAGCGATGGTTAAAGTTTGAGACCGATCGAATCAAAATCAAGACGATGAGACAAAAAAGAGACGATCGTTGAAGAGGATTAAAAGCGCCCGGAAACCTTTATTTATCTCTTCTTTGGTCAGATTCTGCTCACTTAATTCATTATTGGTGACCAGTTCCCTGGTGTTTTGTTTTACAAAATGTACAAGATGTAAATCCACAGCCATGTGGTTTATTTTCTTTCCATACATCTGTTACCAGTTGAAGTATCATTCACTCTGAAAATAGCAGCAAACAGGAAATTGCTCACACACTGAAGTCTCTTCAGGTTCCCGTGTGAGGTCATACAGATGGGACACGGCGGTGTGGGGAGCAAAGCTGGCGCTGGCGGCTGACAGGCCCCTCCAGTGGCCAATCAGGATGCATGTCTCCTCAATGGGTGTCAGCAAGCTCTGCTTCCTGTTCTCCCTGGCTCTCTGTGCCCTGTTGCTCCTCATCCCCACCCTCCAGCCCTCACAGCATCAGGGGGACCTTCCCCGGCCCCGGGCCCACAACAAGCCTGCCTGGCACCCTGGACGTCTGGTGGTTCCTCTCCAGGCAGATATGGGGAAAGTGACAGTGGGGCGTAATGGGATTGATGGTGACTCTATGGGGCAAAGTACACCAAGAGAGACCAATAGGACTGTGGATGGGGACTGGGTGTATACAGCTCGTCGAGCTGACACCCAGGGTGCTGGGAAGCATATAGACTCTCAGACAGGGTCAGACGGGGACTTTCTCCACAGAACTGGGGGTGTGATGGGGGCTGGAGGGTCTCGGCCCAGGAACCCTCTGGAGCTGAAAGACATTTTCATAGCGGTGAAGACCACCAGGAAGTACCACAAGTCCAGATTGGATCTGCTGTTCCAGACCTGGGTGTCCAAAGCCAAAGAACAGACCTTTATATTCACAGATGGGGAGGATCAGGAGCTGAGGAGGAGAGCAGGGGATAACATCATCAACACCAACTGTTCAGCAGCACACACACGGCAGGCCCTGTGCTGTAAGATGTCTGTGGAATACGACAAGTTCATCGAGTCACAGAGGAAgtggttCTGCCATATGGATGATGATAACTATGTGATTGTACCCAGTCTGCTGAAGCTGCTGTCCTCCTACCACCATACGCAGGATGTTTATCTGGGCCGGCCCAGCCTCGACCACCCCATAGAGGCCGCAGAGAGGGTCAAGAGTGACGGATCTGTGTCAGTGAAGTTCTGGTTTGCTACAGGAGGAGCAGGGTTCTGTATCAGTCGTGGTCTGGCCCTCAAGATGAGTCCATGGGCTAGtcTGGGCAACTTCATCAGCACGGCGGAGAAGATCCGTCTCCCTGACGACTGCACCATGGGTTACATCATTGAGGCGCTGCTGGAggtgacactgacacacacacacctcttccacTCCCACCTGGAGAACCTGCAGAGGCTTCCCACAGACACCGTGCTGGAGCAGgtCACTTTGAGCTACGGAGGTTTTGAGAACAGGAGGAATGTGATCAGCATTGGAGGAGCCTTCTCTCTGGTGGAGGACCCGTCACGgtttaAGACTGTCCACTGCCTCCTCTACCCAGAGACTGACTGGTGTCCTAGTTTGGGTCACCATTGATGACCACTACAGTACAGCATATCTACAATACTTCCTACCGGCCTGGTTGACTGGTGTCCTAGTATGGGTCACCATTGATGACCACTACAGTACAGCATATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2146175 lncRNA downstream 134369 50077523 ~ 50080699 (-) False LOC110502926
TU2146176 lncRNA downstream 134369 50077523 ~ 50080699 (-) False LOC110502926
TU2146177 lncRNA downstream 134369 50077523 ~ 50080699 (-) True LOC110502926
TU2146186 lncRNA downstream 165997 50048867 ~ 50049071 (-) True G1875988
TU2146227 lncRNA downstream 169125 50045633 ~ 50045943 (-) True G1876021
TU2146270 lncRNA upstream 13938 50267434 ~ 50269466 (-) True G1876052
TU2146268 lncRNA upstream 22225 50275721 ~ 50276830 (-) True G1876050
TU2146317 lncRNA upstream 39185 50292681 ~ 50293359 (-) True G1876099
TU2146319 lncRNA upstream 40795 50294291 ~ 50294641 (-) True G1876101
TU2146320 lncRNA upstream 41607 50295103 ~ 50295545 (-) True G1876102
XR_005039168.1 mRNA downstream 20793 50191524 ~ 50194275 (-) True LOC118943861
XM_036960708.1 mRNA downstream 68759 50110420 ~ 50146309 (-) True LOC110503023
XM_021581275.2 mRNA downstream 113368 50078607 ~ 50101700 (-) False LOC110502926
XM_036960719.1 mRNA downstream 147276 50052834 ~ 50067792 (-) True LOC110502931
XM_036960714.1 mRNA downstream 171700 50025694 ~ 50043368 (-) True LOC110502925
XM_021581405.1 mRNA upstream 43154 50296650 ~ 50297792 (-) True LOC110503026
XM_036960736.1 mRNA upstream 105787 50359283 ~ 50410527 (-) False LOC110502946
XM_036960735.1 mRNA upstream 107693 50361189 ~ 50400218 (-) True LOC110502946
XM_021581294.2 mRNA upstream 242327 50495823 ~ 50513513 (-) False LOC110502949
XM_021581292.2 mRNA upstream 242327 50495823 ~ 50513514 (-) False LOC110502949
TU2146264 other downstream 564 50212050 ~ 50214504 (-) False LOC110503025
TU2146182 other downstream 162277 50051291 ~ 50052791 (-) True G1875984
TU2146049 other downstream 368740 49781612 ~ 49846328 (-) True LOC110503141
TU2145415 other downstream 907933 49304519 ~ 49307135 (-) False G1875310
TU2144859 other downstream 1477786 48729612 ~ 48737282 (-) True LOC110502911
TU2146732 other upstream 201825 50455321 ~ 50455709 (-) True G1876460
TU2146797 other upstream 512534 50766030 ~ 50770262 (-) False G1876522
TU2146796 other upstream 512600 50766096 ~ 50770262 (-) False G1876522
TU2146794 other upstream 512693 50766189 ~ 50770262 (-) False G1876522
TU2146795 other upstream 512693 50766189 ~ 50770317 (-) True G1876522

Expression Profile