RNA id: XM_036960736.1


Basic Information

Item Value
RNA id XM_036960736.1
length 9777
RNA type mRNA
GC content 0.55
exon number 43
gene id LOC110502946
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 50359283 ~ 50410527 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAACAGCCCAGAGAAGCTGTCAGCCCATGTGGCGTGGCCGGGGAGAGCATGTCAGACATTTAAATGAAATAGAGAAAGGGATTCATAGAAGCGAGAGAAATTAGAAGGGCTTGGCAGGGAACGGAAGCagggacacacactgacacaggcaAGCGCACTCTCACCGACGGAAGAGAAGGGATTTTCGAGGAACATTTTGCTAACCGTTTCCTCACTAACATTTCGCAATCCCTTTGGTGTTTTCTACTGATATTAAAACACCTAACTACAGtaaCCCTTCCTTCCCAGGATGGAGGAGATTGTTGTAGCAGGGATATCGGGCCGGCTTCCTGAGTCGGACAACCTGGAGGAATTCTGGGAGAACCTCTTCAATGGGGTTGACATGGTAACAGAAGATGACCGACGGTGGAAGCCAGGTCTGTACGGTCTTCCCAAGAGGAACGGCAAGCTGAAGGATATCAGCAGGTTCGATGCTGCGTTCTTCGGGGTCCACCCCAAACAGGCCCACACCATGGACCCTCAGCTTCGCCTCATGCTGGAGATTGCCTACGAAGCCATTGTAGACggagGTCTGAACCCGACAGAGCTGCGTGGCAGCAGGACAGGTGTTTACATTGGGGTGAGCGGGTCGGAGGCGGGCGAGGCCTTCAGCAGAGACCCCGAGGAGTTGCTAGGATACAGCATGACGGGCTGCCAGCGTGCCATGTTTGCCAACCGTCTGTCCTACTTCTTTGACTTCAACGggCCTAGCACAGCAATCGACACTGCCTGCTCCTCCAGCCTATTGGCTTTGGAGAACGCCTTCAATGCCATTCGCCACGGACACTGTGACTCCGCCCTGGTGGGAGGGGTCAACCTGCTGCTCAAGCCAAACACCTCGGTGCAGTTCATGAAGCTGGGCATGCTCAGTCCGGACGGAACCTGCAAGTCCTTCGACTCCTCAGGAAACGGGTACTGTCGTTCAGAGGCTGCGGTGGCGGTActgttgaccagacgttccatgGCTAAGAGGGTATACGCCACGGTACTCAACGCTGGTAACAACACTGACGGATACAAGGAGCAGGGTGTGACGTTCCCTTCAGGTGAGATGCAGCAGAGGCTGGTACGTTCTCTCTACCAGGAGGTCAACATCACCCCTGACCAGGTGGAGTACATCGAGGCCCACGGCACCGGGACcaagGTCGGCGACCCACAGGAAGTGAATGGGATTGTCAGTGTGTTCTGTCAATCAAAGCGTGACCCGCTGCTCATTGGGTCCACCAAGTCCAACATGGGCCACCCAGAGCCCGCCTCTGGCCTGTCTGCACTGGCCAAGgtcgTGTTGTCTCTGGAGCGAGGTGTGTGGGCTCCCAACATCCACTACAACAGCCCCAACACCGATATCCCTGCCCTTAGTGACGGCCGCCTCCGCGTCGTCAACGAGCCCATACCAGTCCGCGGCGGCATCGTTGGGATCAACTCCTTCGGATTTGGAGGCTCCAACGTTCATGTGATCCTCCGCCCCCCTGGTTTTGACACCCCAAAAAACATCAAAGCGCCCCCCAAGATCCTCTCTGAGTCCTCTCCAGTACCTAGGCTCCTCCAGGCCTGCGGGCGCACAGAGGAGgctgtctccaccctcctcaGCAAGGGGAAGGAACACTCGGGCAATGACAACTTCCTGTGTCTGCTGAACGAGGTGTCTGGGATGCCCACAGTGGGGATGCCCTACAGGGGCTACGCTCTGATTGGCTCCAAGGATGATGTCACAGAGGTGCAGAAGACTGAGGCCACGCCCAGACCACTGTGGTACGTCTGCTCAGGTATGGGCACCCAGTGGGGTGGGATGGGGCGCAGTCTGATGCAGCTGCCAGACTTCAGGGAGTCCATCTTGCGTTCGGACATAGCATTGAAGGACACAGGGATGTGTGTGTCCAGTCTGCTCATGGAGGCTGATGAGAGCACCTTCGAGGACACCGTCCAAGCCTTCGTAGGCCTCGCTGCCATACAGATCGCCCAGATTGACCTGCTCCAGATGCTGGGTCTGAAGCCAGACGGCATTGTGGGCcacagtgtgggagagctggcctGTGGCTATGCAGACGGATCCCTCAGTCACAGTGAGGCTATCCTGGCAGCATACTGGAGAGGGAGATCCATTAACGAGGCTAACCTGCCCCCTGGTGGCATGGCTGCAGTCgGTCTGACCTGGGCAGAGTGTAAGGCACAATGTCCCCAGGGTGTGGTTCCAGCCTGTCACAACGCTGAAGACACCGTCACCATCTCTGGCCCTGCGGAGGAAGTGAGTAGGTTTGTATCAGAGCTGAAGGAGAGTGGTGTGTTTGCCAAGGAGGTTCGTAGTGCTGGTGTAGCCTTCCATTCTTACTACATGGCCTCCATCGCTCCCGCCCTGCTGGCTGCTCTCAAGAGGGTGATCAAGGAGCCTAAGCAGAGGTCTGCCAGGTGGATCAGTACATCTATCCCCCAGAAGGACTGGAACAGCCCGCTGGCTCTGTACTCCTCAGCAGAGTACCATTGTAATAACCTGGTCAGCCCTGTCCTCTTCCAGGAGGGCCTGAGCCTGGTGCCTGATAACGCTGTGGTTGTGGAGATAGCACCACACGCTCTGCTGCAGgCGATCCTGAAGCGCAGCCTGAAGCCCACGTGTTCCATCCTGCCCTTGATGAGGAGAGGCCATGCCAACAACCTGGAgttcttcctctctcacatcgGCAAGGTCTACATGAACGGGATCAACGTGGACTGTAAGCAGCTGTACCCACCCGTGGAGTACCCGGTGCCTGCGGGCACCCCTCTGATCTCTCCCCTGGTGCAGTGGGACCACGCCCAGACCTGGGATGTACCCAAGGCTGAGGACTTCCCTGCTGGTTCTGGAGGGTCCACCTCAGCTACCATCTATAACATTGACATGAACCCAGAGTCTCAAGACTACTATATGATTGGCCACTGCATCGATGGGCGTGTCTTGTACCCGGCCACGGGTTACCTGGTGCTAGCCTGGAGGACCCTGGTGAGGAGCCTGGGAGTTGTCATGGAAACCACCCCTGTCAACTTCGAGGACGTCACCATCCACAGGGCCACCATCTTACCCAAGActgGTTCAGTCCAGTTGGAGGTGCGTGTCATGCCCGCCACCAGTCGGTTTGAGGTGTCTGAGAACGGCAACCTGGCTGTCAGTGGTAAGGTGAGCATTCTGGAGGACTCTGCTCTGGACTCATTTTGCTCTCAGATCGGTAAGCCTGTCGCCGGGGACGACGGTGACCCCAAACTGCGCCTGACGGCCCATGACATCTACAAGGAGCTCCGTCTCCGCGGTTACGACTATGGCAAGACCTTCCAGGGCATCCTGGAGTCCAACAATGCAGGTGACAATGGGAAGCTGCAGTGGACCGGTAACTGGGTGACCTTCCTGGACACTATGCTGCAGATGATCGTGGTTGGCCTATCAGGACGCAGCCTTCGCCTACCCACGCGGATCCGCTCTGTGTATGTGGACCCCAACATCCACCAGGAGAGGGTCACTGACTACGCAGAGGGGAAGAAAGCGGTGGACGTCCACGTCAGCCGTTGCCTTGACAACATTGTGGCGGGCGGAGTCCAGATCTGCGGCCTGCATGCCACGGTAGCGCCGCGTCGTCAGCAGCAACAGAGCCCGCCCACCCTGGAGGAATTTGTGTTCGTTCCCTACCTGGAGACAGAATGCCTGTCAGCCAATGACAAACTAGGAGACCAACTAAAGAACTGTAAAGGTCTGATCCACAAGCTGCAGAAGAAGCTGGCTCCTCAGGGCGTCAAGCTCTCCATCCCTGGTCTAGAGGGGGTGTCTGGCCCTGCTGTACCCAGCCCAGAGCCCTCTGAGCCTGGCTTGCTGcggctgctgtccctgctgtgcGGTCTGGAGCTGAACGGTAACCTGCGGTCAGAGCTGGAGCAGACTgttgagaaggagaggggttgtCTCCTCCAGGACACCCTGCTACATGGCCTGCTGGACGGCCCAGCCCTCAGACactgcctggacacagccctggAGAACTCTACCCCCGGGAAGATCAAAGTCCTGGAGGCTCTCTCCAGCGACGGTCGTCTCTTCTCCCGCGCCGTGCCCATCCTCAACATCCAGCCCATGCTCCGCCTTGACTATGTTGCCACGGCAATGACCCTCGACCTCCTGACCCCCCATCAGACCACCCTGGATGCCCTGGGAGTCACAGCGGCACAGTGGGACCCCCACCAGGGCCCCGTGCCCGGGGGAGAAGTCGGAGGGGCTGACCTGGTGGTGTGTAATCACGCCTGGGGGCCCCTGGGGGCCGGGGCagaggtggtggtagagaaccTGGCCTCTGGGGCCAAAGAAGGGGGCTTTGTGATGCTCCACACCCTATTGAAGGGAGAGACTCTGGCGGAGACGGTGGCCTTCCTCACCTCCAAGAACAGCAAGACCAACCGTCAGAGACTGTTCTCGCAGGCTGAGTGGGAGAAGGTGTTCTCTGATGCATCTCTCAAATTGGTGGCTGTTAGGAAGTCCTTCTATGGCTCTGCCCTATTCCTGTGTCGCCGTCGGTTACCCCGCAAACAGCCCATCTTCCTGCCTGTTGACAGCATGGACTACCAGTGGGTGGACACACTCAAGGCGACGCTGGCTGAGCCCTCGGACTCTCCGGTCTGGCTGACTGCTACCCAGACCCACTCTGGGGTGGTGGGCATGGTCAACTGTCTACGCCAGGAGCCTGGTGGCAACCGCATACGgTGTGCATTTGTGTCCAACCTGTGTGAGTCCACTGTGGCGCCCACCCTGCAGCCTACCCATAGTTCCATGAGGTCTgtgctggagggagacctgtGTATGAACGTGTTCAGGGATGGACACTGGGGAATGTTCAGACACCAGCTCATCTCTCAGGATCTGAGTGAGGAGTTGACAGAGCAGGCGTACGTTAACGTGTTGACCCGCGGTGACCTCTCCTCCCTGCGTTGGATCGCCTCGCCCCTCCGTAATTTTGTGGCGAGCAGCCCCCACGTGCAGCTGTGTCGGGTCTACTACAGCTCCCTCAACTTCAGAGACATCATGCTGGCCACTGGGAAACTGCCACCGGACGCCATCCCAGGTGACCTGGCCCTGCAGCAGTGCATGTTGGGTATGGAGTTCTCAGGTCGTGACCCCAGCGGTAGGCGTGTGATGGGGCTGTTGCCTGCTAAAGGCCTGGCCACTTGCGTCGACGCTGACACACGCTTCCTCTGGGACGTCCCAGACAGCTGGACCCTGGAGCAGGCTGCATCGGTGCCAGTGGTCTATTCTACAGCCTACTACTCGCTGGTGGTGCGTGGCAGGCTCCGCCCAGGCGAGAGTGTCCTCATCCACTCAGGGTCAGGGGGCGTTGGCCAGGCTGCCATCGCCATCGCACTCAGTCAGCACTGTAGGGTTTTCACTACTGTTGGTTCAGCAGAGAAGCGTGCCTACCTACAGGAGCGTTTCCCCCAGCTCACCGCTGAGTCCTTCGCCAACTCTAGAGACGCCACCTTCGAACAGCacgtcctgctacacacacatgGAAAAGGAGTGAACATGGTGTTAAACTCCCTGGCTGAGGAGAAACTGCAGGCCAGTCTTCGCTGTCTGGCCCGACACGGACGCTTCCTGGAGATCGGCAAATACGACCTGTCCAACAACTCCCCTCTGGGAATGGCTCTCTTCCTGAAGAACGTGGCGTTCCACGGAATCCTATTGGATGCCCTGTTTGAGGAGGGGAACCGGGAGTGGGAGGAGGTGTCCCAGCTGCTGAAGGAGGGCATTGTGGGAGGTGTAGTCAAGCCCCTGAGGACTACAGTGTTTGAGAGAGACCAGGTGGAGGAGGCCTTCAGATACATGGCCCAGGGAAAACACATTGGCAAAGTACAGCTGCAGGTGCGTTCTGAGGAGATGGGTAATGGTACCCAGGCGGTGGGctcgcccctctccctccccgcCATCTGCCGTACCTTCTGCCCCGCCTCCCACTCTTACATCATCACCGGGGGACTGGGTGGCTTCGGGCTGGAGCTCGCCCATTGGCTGACGGAGAGGGGCGCCCGCAAACTGGTGCTCACCTCCAGATCGGGCATCCGCAACGGTTACCAGGCCAAGCGTGTGCGTGAGTGGCAGGGGATGGGCGTGCAGGTGCTGGTGTCCACCAGTGACGTCAGCACCCAGGAGGGGGCAGAGCAACTCATTAACGAGGCCTGCAGGTTGGGGCCTGTGGGAGGAGTCTTTCACCTTGCCATGgTGTTGAAGGATGGTATGCTAGAGAATCTGACTCCTCAGCTGTTCCTGGATGTCAACAAACCCAAATACAACGGCACCCTCCACTTAGACAATGTGACCAGAAAGATGTGTCCAGACCTCAGTTACTTTGTAGCCTTCTCCTCTGTGAGCTGCGGCCGCGGCAACGCCGGCCAGAGTAACTATGGTTACGCCAACTCCGCCATGGAGCGCGTGTGTGAGCAGCGGCTCCACGACGGCCTGCCTGGATTGGCTGTCCAGTGGGGCGCCATTGGTGACGTGGGCGTTGTCCTGGAGACCATGGGCGGTAATGacgtggtggtgggtgggactcTCCCGCAGcgcatcacttcctgtttggagGTGCTGGACCGCTTCCTGTGCGAGCGTCGTCCGGTGATGTCGAGCTTCGTGCTGGCAGAAAGGAGCGTGGTGAAGAGCGAAGGAACCGGACAGAGAGACCTGGTGGAGGCTGTTGCTCATATACTGGgtgTACGTGATGTCAGCAGCCTGAACGCTGATGCCTCATTGGCTGATCTGGGTCTGGACTCTCTTATGGGCGTGGAAGTGCGTCAGACACTGGAGCGCGACTACGACATTGTCATGGCAATGAGGGAGATCCGACAGCTTACCATCAACAAGCTCAGAGAGCTGTCTAGCCAACCGGCAGgaacagcagAGTCCCGTCAGTCTCCAGTGAAGAAGGGAGGAGTGCGTTCTCTGTTGGAGTCGGACCTCAGTTTGATGCTGGTCAACCCAGACAGCCCCACGGTCTCACGTCTCAACGAGGTGCAGAGTGTTGAGCGCCCGCTGTTCCTGGTCCACCCTATAGAGGGCTCCATCGCTGCCTTCCGAACGCTCACCGCCAAGCTCAGTGTTCCCTGCTACGGCCTGCAGTGCACTAAAGCTGCTCCTTTGGACAGTATCCAGTCTCTGGCTGCATACTATGTGGAGTGTATAGGTCAGgTGCAATCAGAGGGTCCGTACCGGATCGCCGGATACTCCTTTGGAGCCTGCGTGGCGTTTGAGATGTGTTCTCAGCTGCAGGCACAGGGTAGGACCATAGAGTACCTCTTCCTCTTCGACGGATCACACTCCTATGTCGCCGCTTACACACAGAGCTACAAATCCAAGCTGACCCCTGGTAATGAGTCAGAGGCAGAGACTGAAGCTATGTGTGCCTTCATCCAGCAGTTTACTGGCATCGAGTACAGCAAgttgtTGGagaccctcctccccctgtctgatCTGAAAGCCCGTGTCAACATGGCGGTGGACCTCATCACCTCCAGCCATAAGAACGTCAGTAAAGACTCCCTGCGATTCGCCGCCGCCACATTCTACTACAAACTCAAGGCTGCCGACGGTTACGTCCCGGCAACCAAATACCATGGCAACGTCACCCTGCTCCGCGCCAAGGCCAGCAGTGACTACGGAGACAACTTGGGGGCCGACTACAAACTGAACGAGGTGTGTGATGGTAAGGTGTCGGTTCACGTCATCGAGGGAGACCACCGCAGCTTCCTGGAAGGAGAGGGGGTTGAGTCTATCAGCAGCATCATCCACAGCTCATTGGCCGAGCCACGCATTAGTGCCCGAGAGGGTTAGACCAGTCCCGCCCATTCCCAGCCTTCTCCCCCAATAGCATCAACTTCTCCTATCATCAAATCTAAACCCCATTGATCAATACATATAATGTACGCAATCCCCCACCAATTAAAGCTTGTCTCGCTGCACAGGGTATGTTCCCATGGGAACAAATCGTGCTGTATGTTATGCTACCAATAAGGTcctctcttttatttattttttaccctgTCTCTTTATCATGTTTGGAACGGTAGAATAAATGTCCATACTGATAATCCTGCTACAACTGGAAACACGCTGGCTCAACCCAATAGCTAGCCTAGCATGTGAGCCTGGCTGTGTTGCCAACTGACCAATGACTAGATAACCTACCTAGCTGCTGTGTTATGATACTGCTAAACGGTGTGTCGTTACCTTGATGATAAAGCTGTGTGGGTGGACACTTTTTTATctactgtgtgtttgtgcgtgtattTGCATGTGAGATCTTATGCCAAACCCTAGCAGTGCCCTAATGATGCAGACATAGGTCTGTTCCACCTGGACGTAGCCTCCTGTCTCTTTCACATGTCTAACACCTGTTCAAGCACTGTACCTGTTACCAAGTGTGACGTTGACATTGTTACATGGTTGTCTTGTGTTTGGGTAGGTTTTATTCTGTTTGTTTTGCCAGATTTGGTCAGAAGTTAAGTTATGATCCCTATTTTAGTAGATTTTGATGTGTTTTGTTGCCTTGCAGAGATGGTGACTGTTGTAGTATTGTTACACTGGTCTACTTAAGGTAGGTTCACACATAAGGTTCATGCATAAGGTTCATGCATAAGACTCCTCGTCTTGAGAACTAAAGGTGTTACGGTCGCTACAAGGAAATGGATCAAGTGTTTGACTGATGCCATATTTGATCAAGTTAATGACTTTATTACCTATTCAGCTGTTTCCTAGACTCCATGTCTTCCCAGTTAAGAACTGAACCTTTTGAAAACAACAGTATTCTTCTGGGTTGagatctgtgtgtgttttctttcctGTGTGAGTACACCTTTTTAAGAGGACTGATTAGATATCTACAGTTCACGTTTCTATGATGTCGGGTTCTTTGACAGAAAAAAAAGTCATTTAAATTGCTGCTGTTTAAAAATGTATGATGTTCTATGTGACTACAATGGATTACTGAATTAACATTGTCTTTTCCTTAAATGGGAAGACATTTTCCAACATTCCTGAAATATTGTTACACAAGACTCATTTTAAATATTTGAATATTACTGCTGTCAACCTGCAATGCTTCAAAACTCTTTGTCACTTATTTGAAAGGAAATTGAGCAATAGTCCAGTATTTGGGTAGTGCCATACAAGTGATGCCCTGCTAAACCTATGGTCGTGTTCACTAGGGCACAACGTAGCAAAATGCTTTGCAACTGAAGATGAGCGTTCATTTTTGGTGCCCACTGAACATGACCAGATTTGACTGTCTTACTGAAAGAGTAGTAGTTTGTCCAAGCTTCCATTTAGTTTGTAATGTGGAGTCATTGATCTGAAGAACGGGCCTTGTTGAGGAGTAGGTAGACTTGACCCCTAACCACTAGTCCAGAAACAGGTATTTTACTGTCCTCCCGTTAGGACTGTTGGGAGGGTAATCTGATCCTATTGTACATCTGTGGTTACGAGGCAACTTTAGACCTCTATCTTGTTTTTGACTCCCATGATCTTTGCTGTCCCCTAAAGGTCCTCTAAGATCTTGGGTCCAATCCCAGAATGCAACAGACTGACCTGACTTCTGAGACTTCTAATCAGGTCTATGAAGAGTCGGGTGACTGTAATTTGAACCCTGTGATTGGCTGCAGTAAAAAGGAGGAGGAAATTGACGGTGTGCTCCTCTAGTTGTATTTATTGTATTAGTCCAAATAAAGAACTATCACTAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2146406 lncRNA downstream 4809 50354127 ~ 50354474 (-) True G1876176
TU2146369 lncRNA downstream 24872 50323380 ~ 50334411 (-) False G1876144
TU2146374 lncRNA downstream 29973 50324973 ~ 50329310 (-) True G1876144
TU2146353 lncRNA downstream 43185 50315874 ~ 50316098 (-) True G1876132
TU2146320 lncRNA downstream 63738 50295103 ~ 50295545 (-) True G1876102
TU2146716 lncRNA upstream 22674 50433201 ~ 50435068 (-) True G1876444
TU2146733 lncRNA upstream 45243 50455770 ~ 50456624 (-) True G1876461
TU2146692 lncRNA upstream 75319 50485846 ~ 50489522 (-) True G1876423
TU2146773 lncRNA upstream 138590 50549117 ~ 50551680 (-) True G1876501
TU2146792 lncRNA upstream 162991 50573518 ~ 50574006 (-) True G1876520
XM_021581405.1 mRNA downstream 61491 50296650 ~ 50297792 (-) True LOC110503026
XM_036960732.1 mRNA downstream 105787 50215068 ~ 50253496 (-) False LOC110503025
XM_036960734.1 mRNA downstream 105787 50215068 ~ 50253496 (-) False LOC110503025
XM_036960731.1 mRNA downstream 107902 50215068 ~ 50251381 (-) False LOC110503025
XR_005039168.1 mRNA downstream 165008 50191524 ~ 50194275 (-) True LOC118943861
XM_021581294.2 mRNA upstream 85296 50495823 ~ 50513513 (-) False LOC110502949
XM_021581292.2 mRNA upstream 85296 50495823 ~ 50513514 (-) False LOC110502949
XM_021581293.2 mRNA upstream 85296 50495823 ~ 50513514 (-) False LOC110502949
XM_021581295.2 mRNA upstream 85296 50495823 ~ 50513514 (-) False LOC110502949
XM_021581296.2 mRNA upstream 85296 50495823 ~ 50513514 (-) False LOC110502949
TU2146264 other downstream 144779 50212050 ~ 50214504 (-) False LOC110503025
TU2146182 other downstream 306492 50051291 ~ 50052791 (-) True G1875984
TU2146049 other downstream 512955 49781612 ~ 49846328 (-) True LOC110503141
TU2145415 other downstream 1052148 49304519 ~ 49307135 (-) False G1875310
TU2144859 other downstream 1622001 48729612 ~ 48737282 (-) True LOC110502911
TU2146732 other upstream 44794 50455321 ~ 50455709 (-) True G1876460
TU2146797 other upstream 355503 50766030 ~ 50770262 (-) False G1876522
TU2146796 other upstream 355569 50766096 ~ 50770262 (-) False G1876522
TU2146794 other upstream 355662 50766189 ~ 50770262 (-) False G1876522
TU2146795 other upstream 355662 50766189 ~ 50770317 (-) True G1876522

Expression Profile