RNA id: XM_021581295.2


Basic Information

Item Value
RNA id XM_021581295.2
length 3690
RNA type mRNA
GC content 0.47
exon number 10
gene id LOC110502949
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 50495823 ~ 50513514 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTCACAAGCgaatgccagccagccagccagccagtccacAGTGGAAGAAATTCCTACAGTGGAGAAGAGGCTATTTTTATTTTTCGTTTTTAGAAGGCTTCCATCAAAATCCGTCTCCATCGTTCTTGATTTTGGGAAGGATGATATCAAAAACAGCTAGAACATAATCTACACATTCTAAGCTTTCAGGCAATACCAATATCGTGGTGTTCCGAAGAAAATATAGATATAAAAGGGATGGGGACAACTGGATTGTTACAGAAGGAACTTGATCTTCTGGGATTCATGGGGAGGGGGGCGTCTGAATAAAGGGGTTTGTATTCCAGCAAAGTATGGTGATATTTGGGGTGGATTGGTAACCAAAAAGAGCAACAACACCAAGGTtgacttttttttctttctcaaaACAACACATTCTGAAGGTTGCTTCGTAAGAAAAACGTTGAACCATGGAGTTGAGAGTGGGAAACCGATACAGGCTGGGCAGGAAAATTGGAAGTGGATCTTTTGGAGATATCTATTTGGgCACAGACATCTCAGTGGGAGAGGAGGTCGCCATTAAACTGGAATGTGTGAAGACCAAACACCCACAGCTCCACATAGAGAGTAAGATCTACAAGATGatgcagggaggagTGGGAATCCCGTCCATTAAGTGGTGTGGAGCAGAGGGAGACTACAACGTGATGGTGATGGAGCTGCTAGGCCCCAGTCTGGAGGACCTGTTCAACTTCTGCTCCCGCAAGTTCAGCCTCAAGACTGTCCTGCTGCTGGCTGACCAGATGatCAGCCGGATTGAGTACATCCACTCTAAGAACTTCATCCACAGAGATGTGAAGCCTGACAACTTCCTGATGGGCCTGGGCAAGAAGGGCAACCTGGTGTACATCATCGACTTTGGCCTGGCCAAGAAGTACCGCGACGCCCGCACACATCAGCACATCCCCTACCGCGAGAACAAGAACCTGACCGGCACCGCACGCTATGCCTCCATCAACACCCACCTGGGAATAGaACAGTCTCGTCGTGATGACCTGGAGTCTCTGGGTTATGTCCTGATGTACTTCAACCTGGGCTCTCTGCCCTGGCAGGGCCTCAAGGCCGCCACCAAGAGGCAGAAGTACGAACGCATCAGTGAGAAGAAAATGTCCACCCCCATCGAGGTGCTCTGCAAGGGATACCCCTCTGAGTTCTCCACCTACCTGAACTTCTGTCGTTCTCTGCGGTTCGACGACAAGCCAGACTACTCGTACCTCAGACAGCTGTTCAGGAACCTGTTCCACAGACAGGGCTTCTCTTATGACTACGTCTTTGACTGGAACATGCTCAAGTTTACTGCCCCTAATTCCAAGGGGGCCAACCGTGCAGCAGAGGAGGCGGAGCGGGAGCGGAGGGACAGGGAGGATAGGCTGAGACACAGCAGGAACCCCGGGGCCAGGGGACTCCCTGCCGCCTCAGGACGACCCCGAGGAACACAGGACACGGCGCCGCCTACacccctcacacccacctcaCACACAGCCAACACGTCTCCACGACCGGTGTCTGGTATGGAGCGGGAGAGGAAAGTGAGCATGCGGCTTCACCGGGGAGCTCCCGTTAACGTCTCCTCGTCCGATCTGACGGGACACCAGGACACCTCCCGCATGTCCACCTCACAGAATAGCATTCCCTTCGATCATCACGACAAGTAGAGGCTCGCCACATCCTCGTGTGATGGCCCGATGGCCACACTAGatGGTGCCTGGTATGATCCTTGGTGGCCTCCACTCTGCAGCGCCTCGATGAGACAATACCCACAATGCACCTGGCACAGCGGAGGACAGCAACAAGCCTGGCTCAACCAATCAGCTGCCAGCCAGCCTAACTACTTCAGAAACCATCGGAAGACCACCACTTTCCTCTCCTGACCTGGTGTTCTCTGGTTGATCCTCTCTTTTTCCCACTAGATCTCTTGTTCCTTTCCCGCTCGCCCTTGATTTCCTTGTACTCTCTCCCAAACACTTACAATCGTTGTGATAAAGAATCTCTGAACTACAGACCACATCTGCAACCTTTTTTCTAGGAGACATTTTCAACGTCTGTGCAGAGGCCGTGGTCTTTGCTGCCATGGCGATCTAACTGATTTAATTAAGACGACAAATGGAACGACTACAACCGCCACCGTTATCGCCATGGTTACTACTTATCATCCATGGCACTTTATCAATAGACACCAATTTCTACTCCCACAGTACATTACTAAATAACCCTAATCGATAAATCTGATATGAATAGAGCTAATCGATAATTGCGGCTCTATTTGAAATGGATCGGTTTTGGTGACTGCTTTTCATTTGTACTTATTTACAGACCTCTTTTCTCTGACCACCAGCAGGCTTTTGTTTTCACAGCCCTGATCTGTAACTCTAAAGCCATTTGTAATATATACTATTTGCATGTTTTAACACTGGACATCCCTTTGACCAAGCTGAGGTGTATGAGTCAGGTGGAGGGTTTCAACTCTAAACCACAATTGAAGTCTGTTTTCTTTATGGGGTTCTATGATCAACATCCCTCAAGTTGTATGTGTTATGGAGGGGCCCTGTTAAGGTTTCTTCTTCTCACACTGAGTCAGACTGCCTCATGGTCACATGTACAGATCTACATTCTCATTCTGTTATTTGTATTGTTTCTAGGCTgtgaaattgtattttaatgaagatgTGAAATGTTTCAGCCTTTTCCCTTTTTGGTTTCCTTATTGTGGTGAATTTGGGTTTCTGACCGTAGGTCTCACTTTGTGCTGCTCTAAAGTGGGACATCACTGTCCTATAATCTGTCTGTTTTgggctgtcaatcattgtctgtTCCCAGGCTTTTGCCTTGTCTGTCCACAAAGATGAAGTGCAGGATCGTTTTAGTTGGAGTTCCTCAAATACACCAGATACCCAGAGACTTAAGTGTCTGTTAAATGGCTGCCATTttaaactataatttgttttgaGTGTGAATGGAGTTTTTATATCAAAGGCTCACAATTACTTACTGGCTCCATGTGAACACTGGTGTTATTTTTACATGTTTTGAGAAGTAAAATGGTCCTGCACTGATGTGGCTAGAAGCAGTTGACTAAACCGCTGTGATTACTTCATCTATTCCCTGATAAAAGAACCGATTTACACTTCTCTTGGGTGGGCTATGGCCTTGGACGTTCCAGTTGATGGTcgtgttcccctgctcagacgttgcatgcgTCGACCAGTGATTGCATGCCACATCATCGAATGTGCCGTCAGGTACCTGATTGCGATAATGTGGTTAGCTGATGCGTTGTAAGATCTAGCATGCGTCGGCAAGGCCTGGGCAGTAACACGCCATGTCTTTACTGGTTCTCAGCAAAGAGTGGAGCAAGAGTTTGGGATATTCAATTCGACCTCTGaggataatttcaataagcaagATGAGATTTAAGGGCGGGCACAGCTGAACTGTTGCCATGGTTCAGCTCTATAGGACTGTTTTAATGCTGACCTCATTATTGACTAGTCATTTCTGGTTTGACTCATGGCCAGTTTGGTCAATCACTGACTCACCCTCCTATGTGTAATTAACTAAACTACCAGCTCTAAGAATATTCCTTTATCTCCCATTTGTGTACTTTTAAAAACTGTAAATAAATGAAGTACTTTGTGTACTACCCTGTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2146692 lncRNA downstream 6301 50485846 ~ 50489522 (-) True G1876423
TU2146733 lncRNA downstream 39199 50455770 ~ 50456624 (-) True G1876461
TU2146716 lncRNA downstream 60755 50433201 ~ 50435068 (-) True G1876444
TU2146699 lncRNA downstream 100999 50394471 ~ 50394824 (-) True G1876429
TU2146695 lncRNA downstream 128534 50364356 ~ 50367289 (-) True G1876425
TU2146773 lncRNA upstream 35603 50549117 ~ 50551680 (-) True G1876501
TU2146792 lncRNA upstream 60004 50573518 ~ 50574006 (-) True G1876520
TU2146865 lncRNA upstream 205994 50719508 ~ 50719823 (-) True G1876585
TU2146875 lncRNA upstream 226663 50740177 ~ 50741577 (-) False G1876595
TU2146879 lncRNA upstream 226663 50740177 ~ 50741577 (-) True G1876595
XM_036960736.1 mRNA downstream 85296 50359283 ~ 50410527 (-) False LOC110502946
XM_036960735.1 mRNA downstream 95605 50361189 ~ 50400218 (-) True LOC110502946
XM_021581405.1 mRNA downstream 198031 50296650 ~ 50297792 (-) True LOC110503026
XM_036960732.1 mRNA downstream 242327 50215068 ~ 50253496 (-) False LOC110503025
XM_036960734.1 mRNA downstream 242327 50215068 ~ 50253496 (-) False LOC110503025
XM_036960746.1 mRNA upstream 7400 50520914 ~ 50593400 (-) False LOC110503027
XM_036960747.1 mRNA upstream 7400 50520914 ~ 50593400 (-) True LOC110503027
XM_036960748.1 mRNA upstream 81232 50594746 ~ 50610430 (-) False dnai2b
XM_036960749.1 mRNA upstream 81232 50594746 ~ 50610431 (-) True dnai2b
XM_036960750.1 mRNA upstream 101515 50615029 ~ 50766231 (-) False LOC110502951
TU2146732 other downstream 40114 50455321 ~ 50455709 (-) True G1876460
TU2146264 other downstream 281319 50212050 ~ 50214504 (-) False LOC110503025
TU2146182 other downstream 443032 50051291 ~ 50052791 (-) True G1875984
TU2146049 other downstream 649495 49781612 ~ 49846328 (-) True LOC110503141
TU2145415 other downstream 1188688 49304519 ~ 49307135 (-) False G1875310
TU2146797 other upstream 252516 50766030 ~ 50770262 (-) False G1876522
TU2146796 other upstream 252582 50766096 ~ 50770262 (-) False G1876522
TU2146794 other upstream 252675 50766189 ~ 50770262 (-) False G1876522
TU2146795 other upstream 252675 50766189 ~ 50770317 (-) True G1876522
TU2148254 other upstream 1244648 51758162 ~ 51765341 (-) True G1877873

Expression Profile