RNA id: TCONS_00052481


Basic Information

Item Value
RNA id TCONS_00052481
length 792
lncRNA type inter_gene
GC content 0.39
exon number 4
gene id XLOC_026689
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 42371784 ~ 42373599 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

agtaccaacatgttacaaatgagaattttccccacaaattctttgcaaaactggaccaccacctatttcatttgatgacaattttaaggcaaacagcatccaaaactggccagacagcagataccctggctaatcttttaaaggtttatgatgagcaggaactgaatgatgtcagttcatgacggactactgttatcaaaggtcttttggtcttgctgcgtgagcgtgacttaagattctttaggaacaccatgattgataatcctgctgactgaagatgctttattggccctgcatccactgagggtctctgttgtcctgaagaatgaattggacaccacccacagcacacttccagacctttcttgtcttgtatggattaatcagactccagcttgTGACGATCCCAcatccgactactcactgtccttcacttacttcccggagcaccagagcacctcaccttgaagaagagcaccgtttacaccccattcacgttgtaaataaagcaccccccggggacttgtctgtaaacttatccaactgtgtcgctgttttccctctgcctcgctacaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataatctgctctccgttaaacagaaattgggggaaaaataaatgggggcgaataattctgacttcaacgatatatatatatatatatatatatatacagtttctgtgtagtttacactaaacgagtcacttcacagaatgtgcacttattatttttttt

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0021532 neural tube patterning biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0035270 endocrine system development biological_process
GO:0006364 rRNA processing biological_process
GO:0048513 animal organ development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0006396 RNA processing biological_process
GO:0030490 maturation of SSU-rRNA biological_process
GO:0060429 epithelium development biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0021903 rostrocaudal neural tube patterning biological_process
GO:0021906 hindbrain-spinal cord boundary formation biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0021915 neural tube development biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0060485 mesenchyme development biological_process
GO:0000469 cleavage involved in rRNA processing biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0048339 paraxial mesoderm development biological_process
GO:0048340 paraxial mesoderm morphogenesis biological_process
GO:0048341 paraxial mesoderm formation biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0061053 somite development biological_process
GO:0010002 cardioblast differentiation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0007417 central nervous system development biological_process
GO:0007420 brain development biological_process
GO:0030902 hindbrain development biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0030684 preribosome cellular_component
GO:0030686 90S preribosome cellular_component
GO:0032040 small-subunit processome cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005634 nucleus cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051980 lncRNA downstream 155771 42212710 ~ 42216013 (-) True XLOC_026688
TCONS_00053095 lncRNA downstream 166672 42183353 ~ 42205112 (-) False XLOC_026687
TCONS_00052483 lncRNA upstream 175345 42548944 ~ 42746784 (-) False XLOC_026690
TCONS_00052484 lncRNA upstream 308383 42681982 ~ 42746784 (-) True XLOC_026690
TCONS_00053097 lncRNA upstream 585469 42959068 ~ 42963234 (-) True XLOC_026692
TCONS_00053098 lncRNA upstream 651222 43024821 ~ 43026735 (-) True XLOC_026694
TCONS_00052485 lncRNA upstream 813595 43187194 ~ 43189085 (-) True XLOC_026695
TCONS_00051977 mRNA downstream 246129 42121166 ~ 42125655 (-) True XLOC_026686
TCONS_00051976 mRNA downstream 285136 42032360 ~ 42086648 (-) True XLOC_026685
TCONS_00051972 mRNA downstream 285207 41955358 ~ 42086577 (-) False XLOC_026685
TCONS_00051982 mRNA upstream 544544 42918143 ~ 42968544 (-) False XLOC_026692
TCONS_00051983 mRNA upstream 590446 42964045 ~ 42981739 (-) False XLOC_026693
TCONS_00051984 mRNA upstream 591117 42964716 ~ 42967698 (-) True XLOC_026693
TCONS_00051985 mRNA upstream 973918 43347517 ~ 43821191 (-) False XLOC_026696
TCONS_00051986 mRNA upstream 978957 43352556 ~ 43356082 (-) True XLOC_026697
TCONS_00051964 other downstream 1059641 41312022 ~ 41312143 (-) True XLOC_026680
TCONS_00051939 other downstream 1842005 40526882 ~ 40529779 (-) False XLOC_026667
TCONS_00051938 other downstream 1842006 40526879 ~ 40529778 (-) False XLOC_026667
TCONS_00051924 other downstream 2213097 40154294 ~ 40158687 (-) True XLOC_026658
TCONS_00051921 other downstream 2282983 40088685 ~ 40088801 (-) True XLOC_026657
TCONS_00051981 other upstream 492484 42866083 ~ 42866200 (-) True XLOC_026691
TCONS_00052007 other upstream 1708024 44081623 ~ 44094226 (-) False XLOC_026707
TCONS_00052055 other upstream 4821538 47195137 ~ 47195234 (-) True XLOC_026732
TCONS_00052070 other upstream 6704163 49077762 ~ 49077879 (-) True XLOC_026748
TCONS_00052082 other upstream 7441598 49815197 ~ 49815287 (-) False XLOC_026760

Expression Profile

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