RNA id: TCONS_00051983


Basic Information

Item Value
RNA id TCONS_00051983
length 1345
RNA type mRNA
GC content 0.47
exon number 3
gene id XLOC_026693
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 42964045 ~ 42981739 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTTCAGGGAAACATTTCGCTTCGGTTGCAGGACGCGGGACGAGGCTCGACCTGTTGACTCCAGGACACTTTCTCAGAGTTTCTGCGCATCCCCGACACAGATTCCGCGTTCACAAGaCAGATTTTTGAAGAGTTCTGACTAGCTGCTTGTATGCAGGGCATGACGACTCATTTTAAAGCAGGCAAAGCTTTAAAGGTAAAGAAGGAGGCAGGTGAGAATGCTCCGGCGCTCAGCGACGATGAGCTGGTGGCCATGTCTGTGCGGGAGCTCAACCAGCACCTGCGCGGCTTGACCAAGGAAGACGTGGTGCGGCTGAAACAGCGGCGGCGCACGCTCAAGAACCGCGGATACGCTGCCAGCTGCCGCATCAAGCGCGTCACGCAGAAGGAGGAGCTTGAGCGGCAAAAGACGGAGCTGCAACACGAAGTGGACAAGCTGGCTCGAGAAAACGCCAGCATGCGACTGGAGCTGGACGCGCTTCGAGCTAAATACGAGGCCCTACAGTGCTTTGCCCGGACTGTCACCCGTGGGCCGCCCGGTAAAGTGGCTGCTACCAGTGTCATCACGATTGTCAAGTCTGCCAATCACAGCCCAAGCTCCGCCCCCTTTTCAGCACAATCGTAGTGCAGGCTGACAGTGCCAACCTGGTCCAATCTGGCTCTGAATCCAGACTGAATCTGAATCTGAGATGCTCGGGGTTCAGACTGACGGGATGGCGGACGCCTTCATCTACGCGACTACAACAGgctgcattcattttctttcatgtttttttttttttttttatactcatacacaaaatacatttatattgtcTGTGCACTGTGCTAGAAAGTCCGGCACCGGCAGGGCACGACGACCGCTATTTCCACAGGCTGAGCGTTAGCTGAGATGAGCACTTGTTGAAGAAGATACTTGATTTATGATATGGCAGCACTGGTCAGACAGCTCTGTGACATATTACATATGCAttggaaatattttatatatcttACGTAATAATTATTCctatatattacaaaaatatatagtatAGCACTCAGATGGTTGAGGTCAGTAAGATATGATGCAattttgttatatataatatattcagCAGCAAATGTAGCTTtgttgtcatttaaataaattataatttaacgCATTCAAAGAGGAAACTTTTTAAACTATTCCATACAGTGGcagagagagcttaatgtgctgcaatttaggggtgctttcacacctgtagatcgattgttttgttccaaaacagggcTTATAACCATTactgtgttgctctttgttcttggtgtggttggctttcacacagcaaagtttctaaatggaccaaaatagctaaaa

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040624-9 Enables protein heterodimerization activity and transcription cis-regulatory region binding activity. Contributes to DNA-binding transcription factor activity. Acts upstream of or within positive regulation of transcription, DNA-templated and transcription, DNA-templated. Part of transcription regulator complex. Is expressed in exocrine pancreas. Orthologous to human MAFK (MAF bZIP transcription factor K).

Ensembl:

ensembl_id ENSDART00000167844

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053097 lncRNA downstream 811 42959068 ~ 42963234 (-) True XLOC_026692
TCONS_00052483 lncRNA downstream 217261 42548944 ~ 42746784 (-) False XLOC_026690
TCONS_00052484 lncRNA downstream 217261 42681982 ~ 42746784 (-) True XLOC_026690
TCONS_00052482 lncRNA downstream 590446 42371784 ~ 42373599 (-) False XLOC_026689
TCONS_00052481 lncRNA downstream 590446 42371784 ~ 42373599 (-) True XLOC_026689
TCONS_00053098 lncRNA upstream 43082 43024821 ~ 43026735 (-) True XLOC_026694
TCONS_00052485 lncRNA upstream 205455 43187194 ~ 43189085 (-) True XLOC_026695
TCONS_00053099 lncRNA upstream 597751 43579490 ~ 43582355 (-) False XLOC_026698
TCONS_00052486 lncRNA upstream 679953 43661692 ~ 43686469 (-) True XLOC_026698
TCONS_00051994 lncRNA upstream 885046 43866785 ~ 43875129 (-) True XLOC_026702
TCONS_00051977 mRNA downstream 838390 42121166 ~ 42125655 (-) True XLOC_026686
TCONS_00051976 mRNA downstream 877397 42032360 ~ 42086648 (-) True XLOC_026685
TCONS_00051972 mRNA downstream 877468 41955358 ~ 42086577 (-) False XLOC_026685
TCONS_00051985 mRNA upstream 365778 43347517 ~ 43821191 (-) False XLOC_026696
TCONS_00051986 mRNA upstream 370817 43352556 ~ 43356082 (-) True XLOC_026697
TCONS_00051987 mRNA upstream 597236 43578975 ~ 43662495 (-) False XLOC_026698
TCONS_00051988 mRNA upstream 597751 43579490 ~ 43650189 (-) False XLOC_026698
TCONS_00051989 mRNA upstream 599223 43580962 ~ 43646733 (-) False XLOC_026698
TCONS_00051981 other downstream 97845 42866083 ~ 42866200 (-) True XLOC_026691
TCONS_00051964 other downstream 1651902 41312022 ~ 41312143 (-) True XLOC_026680
TCONS_00051939 other downstream 2434266 40526882 ~ 40529779 (-) False XLOC_026667
TCONS_00051938 other downstream 2434267 40526879 ~ 40529778 (-) False XLOC_026667
TCONS_00051924 other downstream 2805358 40154294 ~ 40158687 (-) True XLOC_026658
TCONS_00052007 other upstream 1099884 44081623 ~ 44094226 (-) False XLOC_026707
TCONS_00052055 other upstream 4213398 47195137 ~ 47195234 (-) True XLOC_026732
TCONS_00052070 other upstream 6096023 49077762 ~ 49077879 (-) True XLOC_026748
TCONS_00052082 other upstream 6833458 49815197 ~ 49815287 (-) False XLOC_026760
TCONS_00052087 other upstream 7122332 50104071 ~ 50117962 (-) True XLOC_026764

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU222725 False 156 TUCP 0.38 1 CI01000046 2439917 ~ 2440072 (+)
rainbow trout (Oncorhynchus mykiss) TU222725 True 412 lncRNA 0.40 1 NC_048566.1 85428237 ~ 85428648 (-)
mexican tetra (Astyanax mexicanus) TU222725 True 1255 lncRNA 0.42 2 NC_035915.1 2179102 ~ 2180592 (+)