RNA id: XM_021581324.2


Basic Information

Item Value
RNA id XM_021581324.2
length 1526
RNA type mRNA
GC content 0.52
exon number 7
gene id LOC100135949
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 53851919 ~ 53855036 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGTAAATGTCCAATGGAATACGTAGACATTCCCAACGGTGGGTAAGGGAAATAGGCCGAACGCGGTGAGTATATAAGGTTGGAAGTGCCACTGTAGCTCGATCCAGCAGCAGTTGTTTTCCGTGTTCTGAGCTTCATTTGAGACAGACAAGAACCCAAGATGTGTGACGACGACGAGACTACTGCTCTTGTGTGCGACAACGGCTCCGGCCTTGTGAAGGCTGGCTTCGCCGGTGATGACGCACCCAGGGCTGTCTTCCCCTCCATCGTTGGTCGCCCTCGTCACCAGggTGTCATGGTCGGTATGGGTCAGAAGGACTCCTACGTAGGAGATGAAGCTCAGAGCAAGAGAGGTATCCTCACTCTGAAGTACCCCATCGAGCACGGTATCATTACTAACTGGGACGATATGGAGAAGATCTGGCACCACACCTTTTACAACGAGCTGCGTGTGGCCCCCGAGGAGCATCCCACCCTGCTCACTGAGGCCCCCCTGAACCCCAAGGCTAACCGTGAAAAGATGACCCAGATCATGTTTGAGACCTTCAACGTCCCCGCCATGTATGTTGCCATCCAGGCTGTGCTGTCCCTGTACGCCTCCGGTCGTACCACTGGTATTGTGCTGGACTCCGGTGATGGTGTGACCCACAACGTGCCCATCTATGAGGGTTATGCCCTTCCCCACGCCATCATGCGTCTGGATCTGGCTGGTCGCGATctgactgactacctcatgaagatcCTCACTGAGCGTGGCTACTCCTTCGTCACAACTGCCGAGCGTGAGATCGTGCGTGACATcaaggagaagctgtgctatgTGGCTCTTGACTTCGAGAACGAGATGGCCACTGccgcttcctcctcctccctggagaAGAGCTACGAGCTTCCCGATGGTCAGGTCATCACCATCGGTAACGAGCGTTTCCGTTGCCCAGAGACCCTCTTCCAGCCTTCCTTTATTGGTATGGAGTCTGCCGGTATTCACGAGACCGCCTATAACAGCATCATGAAGTGCGACATTGACATTCGTAAGGACCTGTACGCCAACAACGTGCTGTCTGGCGGTACCACCATGTACCCTGGTATTGCTGACCGTATGCAGAAGGAGATCACTGCCCTGGCCCCCAGCACCATGAAAATCAAGATCATCGCCCCCCCTGAGCGTAAATACTCCGTCTGGATCGGTGGCTCCATCCTGGCTTCCCTGTCCACTTTCCAGGCCATGTGGATCACCAAGCAGGAATACGACGAGGCAGGCCCCAGCATTGTCCACCGCAAGTGCTTCTAAACCTATCATCGTCTCCAGTGTCTGCTTTCTCTGGATCGCGAAGAGAAACAACATGTTGTTACTGGACTTTTTTTGCCACGCTTTTATTTTGTAACCATGTTACCTGGGGAGAAAATCTGCAAATGTCAACCAACATCAACAAGAACGAAACATGCCATGTTATTATTCAACATGTGAACGTGAATGTACATAAATACTAAGTTATTAAAGTCCATTATTTggtattttcata

Function

GO:

id name namespace
GO:0036302 atrioventricular canal development biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0003272 endocardial cushion formation biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function

KEGG:

id description
K10354 ACTA1; actin, alpha skeletal muscle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2151228 lncRNA downstream 4989 53845948 ~ 53846930 (-) True G1880538
TU2151226 lncRNA downstream 6149 53844291 ~ 53845770 (-) True G1880536
TU2151212 lncRNA downstream 11243 53839525 ~ 53840676 (-) False G1880528
TU2151250 lncRNA upstream 25369 53880405 ~ 53880688 (-) True G1880549
TU2151259 lncRNA upstream 33803 53888839 ~ 53889186 (-) True G1880556
TU2151260 lncRNA upstream 36322 53891358 ~ 53891626 (-) True G1880557
TU2151264 lncRNA upstream 44820 53899856 ~ 53900116 (-) True G1880561
TU2151267 lncRNA upstream 47428 53902464 ~ 53977108 (-) True G1880563
XM_021581325.2 mRNA downstream 267 53848627 ~ 53851652 (-) True ccsapb
XM_021581326.2 mRNA downstream 971 53848627 ~ 53850948 (-) False ccsapb
XM_021581320.2 mRNA downstream 67837 53779267 ~ 53784082 (-) True pdcd2
XM_021581315.2 mRNA downstream 117299 53716988 ~ 53734620 (-) True LOC110502966
XM_021581312.2 mRNA downstream 280438 53565101 ~ 53571481 (-) False LOC110502964
LOC110502973 mRNA upstream 3683 53858719 ~ 53864562 (-) True LOC110502973
XM_036960793.1 mRNA upstream 183982 54039018 ~ 54073953 (-) False LOC110503036
LOC110503071 mRNA upstream 358221 54213257 ~ 54217097 (-) True LOC110503071
XM_036960801.1 mRNA upstream 397845 54252881 ~ 54259094 (-) False LOC110502978
XM_021581332.2 mRNA upstream 397845 54252881 ~ 54282773 (-) True LOC110502978
TU2149919 other downstream 687568 53163242 ~ 53164351 (-) True G1879406
TU2149213 other downstream 1208410 52643088 ~ 52643509 (-) True G1878770
TU2148956 other downstream 1536141 52297228 ~ 52315778 (-) True LOC110502957
TU2148730 other downstream 1644292 52207428 ~ 52207627 (-) True G1878324
TU2148499 other downstream 1814169 52036596 ~ 52037750 (-) True G1878101
TU2151379 other upstream 212751 54067787 ~ 54073949 (-) True LOC110503036
TU2151535 other upstream 389746 54244782 ~ 54246686 (-) False G1880780
TU2152307 other upstream 1147730 55002766 ~ 55003624 (-) True G1881414
TU2154312 other upstream 2750970 56606006 ~ 56610640 (-) False G1883219
TU2154381 other upstream 2788971 56644007 ~ 56709888 (-) False G1883244

Expression Profile