RNA id: TCONS_00053098


Basic Information

Item Value
RNA id TCONS_00053098
length 342
lncRNA type antisense_over
GC content 0.50
exon number 2
gene id XLOC_026694
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 43024821 ~ 43026735 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACTCTTGTCCATGATGTTTTGCTCCAGTGTTTGGGGATCATGAGACACGGCCTGGTCCAGATACTGCAGCAGTTTGCTCATGCTGGAGACGGGGATCCCGAAAGACTGGACAAACAACAGTAGCTGTTGGGGCTCCAGATCTTGCAGAGCtgaaaatgacagagaaaatcaGATGGACACTAGAAGGGAACAGCAATCACCACACACCACAACAGAGGAAACACTCACCTTTGGGAGGTCCAAGTGTGAGCAAGATGACCATAGCATGGACTACCAGAATGTGCATCGTAGCTGTTTCTCCAGTGGTCCATCGCAGGAACACTTGATCCTGAGACTCTGAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053097 lncRNA downstream 61587 42959068 ~ 42963234 (-) True XLOC_026692
TCONS_00052483 lncRNA downstream 278037 42548944 ~ 42746784 (-) False XLOC_026690
TCONS_00052484 lncRNA downstream 278037 42681982 ~ 42746784 (-) True XLOC_026690
TCONS_00052482 lncRNA downstream 651222 42371784 ~ 42373599 (-) False XLOC_026689
TCONS_00052481 lncRNA downstream 651222 42371784 ~ 42373599 (-) True XLOC_026689
TCONS_00052485 lncRNA upstream 160459 43187194 ~ 43189085 (-) True XLOC_026695
TCONS_00053099 lncRNA upstream 552755 43579490 ~ 43582355 (-) False XLOC_026698
TCONS_00052486 lncRNA upstream 634957 43661692 ~ 43686469 (-) True XLOC_026698
TCONS_00051994 lncRNA upstream 840050 43866785 ~ 43875129 (-) True XLOC_026702
TCONS_00051995 lncRNA upstream 851721 43878456 ~ 43889443 (-) True XLOC_026703
TCONS_00051983 mRNA downstream 43082 42964045 ~ 42981739 (-) False XLOC_026693
TCONS_00051982 mRNA downstream 56277 42918143 ~ 42968544 (-) False XLOC_026692
TCONS_00051984 mRNA downstream 57123 42964716 ~ 42967698 (-) True XLOC_026693
TCONS_00051977 mRNA downstream 899166 42121166 ~ 42125655 (-) True XLOC_026686
TCONS_00051976 mRNA downstream 938173 42032360 ~ 42086648 (-) True XLOC_026685
TCONS_00051985 mRNA upstream 320782 43347517 ~ 43821191 (-) False XLOC_026696
TCONS_00051986 mRNA upstream 325821 43352556 ~ 43356082 (-) True XLOC_026697
TCONS_00051987 mRNA upstream 552240 43578975 ~ 43662495 (-) False XLOC_026698
TCONS_00051988 mRNA upstream 552755 43579490 ~ 43650189 (-) False XLOC_026698
TCONS_00051989 mRNA upstream 554227 43580962 ~ 43646733 (-) False XLOC_026698
TCONS_00051981 other downstream 158621 42866083 ~ 42866200 (-) True XLOC_026691
TCONS_00051964 other downstream 1712678 41312022 ~ 41312143 (-) True XLOC_026680
TCONS_00051939 other downstream 2495042 40526882 ~ 40529779 (-) False XLOC_026667
TCONS_00051938 other downstream 2495043 40526879 ~ 40529778 (-) False XLOC_026667
TCONS_00051924 other downstream 2866134 40154294 ~ 40158687 (-) True XLOC_026658
TCONS_00052007 other upstream 1054888 44081623 ~ 44094226 (-) False XLOC_026707
TCONS_00052055 other upstream 4168402 47195137 ~ 47195234 (-) True XLOC_026732
TCONS_00052070 other upstream 6051027 49077762 ~ 49077879 (-) True XLOC_026748
TCONS_00052082 other upstream 6788462 49815197 ~ 49815287 (-) False XLOC_026760
TCONS_00052087 other upstream 7077336 50104071 ~ 50117962 (-) True XLOC_026764