RNA id: TCONS_00004955


Basic Information

Item Value
RNA id TCONS_00004955
length 788
lncRNA type retained_intron
GC content 0.49
exon number 6
gene id XLOC_002664
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 15617741 ~ 15644974 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCGACAGCTGGAGGAGCAGCTGAGGGCAGCAGAAAGGCAGAAGCAGAGCATTGATCAGCGGATGGCAGCCATCCGGGAGCAGCAAGCTAACCTGGACCGTCGTGATAATGAGCTGCGTGCTAATAAGAAGAAACTGTCTGATCTGAAAAGCAAGAAGAGACAACTGGAGCAGAAAATCAGCACAAAACAGGACAGcttGAGGCAGATGGAGCAGAATGAGATCAACTTGGTGGCAATCGAAGAGGAAGCGAATGCCAAGATTGCTGCTGTCAACAACAAGAAAGTGACCATAATGGGGGAGTATTTGAGTCACCTGCAGTCAAAGGCCAGGCTGAATATGGAGAAGGTGTATTTGGCTCTCCAGAGCGCAGGTCTCAGTGCTGAGAAAACCAAACTGGAGACGGACGTTCGAGAAAGTTCAGCTGAACTCAAGAGAGCAGAGGTAGACTATACCAAGCTGGACAAGATAAAGACCAATCTGTTGATGACTTGTAAGACCCTGATGAAACGGGCCAGTGAGATCTGTAACATGACTCCAGGAGAGACGGCCGTCCCGGAAGAACTACATGCAGTGAGCTCAGTCTACTCAGACTCCCCTACCTCTGCTTCATTCAAGCTTGAATCATGTATCACATGACATCGCATGTGTGTGCTTTCTTTTCAGGCTTTCAGCTTGTTGCCTGAGACTCTGGATGAGATCGATGCCATGCTGAATGAGGAAAGAACCAGAGCTGAGTGTTTCACAGGCCTCAGTGATGCTGTGGTGGATGAATATAACAGGCGTGAG

Function

GO:

id name namespace
GO:0007062 sister chromatid cohesion biological_process
GO:0000724 double-strand break repair via homologous recombination biological_process
GO:0006281 DNA repair biological_process
GO:0030915 Smc5-Smc6 complex cellular_component

KEGG:

id description
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-061013-288 Predicted to enable ATP binding activity. Predicted to act upstream of or within double-strand break repair via homologous recombination and sister chromatid cohesion. Predicted to be located in chromosome and nucleus. Predicted to be part of Smc5-Smc6 complex. Orthologous to human SMC5 (structural maintenance of chromosomes 5).

Ensembl:

ensembl_id ENSDART00000147693

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00004943 lncRNA downstream 536601 15082410 ~ 15086297 (-) False XLOC_002660
TCONS_00004942 lncRNA downstream 538851 15082410 ~ 15084047 (-) False XLOC_002660
TCONS_00005751 lncRNA downstream 539002 15083594 ~ 15083896 (-) True XLOC_002660
TCONS_00006013 lncRNA downstream 580150 15031006 ~ 15042748 (-) True XLOC_002656
TCONS_00006014 lncRNA downstream 587938 15032972 ~ 15034960 (-) True XLOC_002657
TCONS_00005752 lncRNA upstream 85381 15716739 ~ 15724104 (-) True XLOC_002666
TCONS_00004964 lncRNA upstream 305708 15937066 ~ 15963981 (-) False XLOC_002668
TCONS_00005753 lncRNA upstream 305708 15937066 ~ 15963985 (-) False XLOC_002668
TCONS_00005754 lncRNA upstream 305708 15937066 ~ 15963986 (-) False XLOC_002668
TCONS_00006015 lncRNA upstream 305708 15937066 ~ 15964029 (-) False XLOC_002668
TCONS_00004950 mRNA downstream 217334 15381972 ~ 15405564 (-) True XLOC_002663
TCONS_00004946 mRNA downstream 282448 15321522 ~ 15340450 (-) False XLOC_002662
TCONS_00004945 mRNA downstream 282486 15321522 ~ 15340412 (-) False XLOC_002662
TCONS_00004947 mRNA downstream 282508 15321528 ~ 15340390 (-) False XLOC_002662
TCONS_00004949 mRNA downstream 282536 15337433 ~ 15340362 (-) True XLOC_002662
TCONS_00004956 mRNA upstream 5832 15637190 ~ 15644904 (-) True XLOC_002664
TCONS_00004957 mRNA upstream 17499 15648857 ~ 15672862 (-) True XLOC_002665
TCONS_00004958 mRNA upstream 184507 15815865 ~ 15854743 (-) False XLOC_002667
TCONS_00004959 mRNA upstream 184519 15815877 ~ 15879569 (-) False XLOC_002667
TCONS_00004960 mRNA upstream 185437 15816795 ~ 15849027 (-) True XLOC_002667
TCONS_00004954 other downstream 3883 15618216 ~ 15619015 (-) False XLOC_002664
TCONS_00004948 other downstream 282566 15337310 ~ 15340332 (-) False XLOC_002662
TCONS_00004937 other downstream 682552 14937827 ~ 14940346 (-) True XLOC_002655
TCONS_00004928 other downstream 890499 14732283 ~ 14732399 (-) True XLOC_002653
TCONS_00004922 other downstream 1134744 14326826 ~ 14488154 (-) False XLOC_002649
TCONS_00004975 other upstream 1446075 17077433 ~ 17083377 (-) False XLOC_002675
TCONS_00004978 other upstream 1472940 17104298 ~ 17132910 (-) True XLOC_002678
TCONS_00004980 other upstream 1514461 17145819 ~ 17156675 (-) True XLOC_002679
TCONS_00004991 other upstream 1711007 17342365 ~ 17342481 (-) True XLOC_002684
TCONS_00004997 other upstream 1862123 17493481 ~ 17501404 (-) True XLOC_002687

Expression Profile

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