RNA id: XM_021581360.2


Basic Information

Item Value
RNA id XM_021581360.2
length 1957
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC110502998
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 55981267 ~ 55984852 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGGATAGAAGGGGACAATCAGTCAGTGGGACCAGGTAGCCACCTCAAAGCATATCTGGTTACTTTGGATGACAGCGTAACCATGACAAAATCATTTGACTAAAACTATTGTCTTTTCCTCGCCATCCACGGGTCAGATAACCAACCAATCACAGTTCACATAATCGCTTTTCTTTCCATCTTAGAATAATATTATTAAAACTAGTGAGCAAGCCTGGTCTTCAGGAATAGGTTATGTTGAAACGAAATAGAAAAGGTGGACAACGACTGTGGAAGGAGTAAACTCTTTCTCTCAGTATACTTGATGGGAATGCTATGCATTTTGTATTGCCATTCATGAACGGGACTTTAGTTTTTACATTTCGATTGGATTTTATATTTTGATACAGCCTACTTTTGGAGAACTTCATGGTTGTTCGTGGACTTACAGTGTAGGCTACTTGCATTACTGTCTTAGCCATAACAGAGGACGTGGAAGTAGAGCAAAATATACGTGTTTATTAACTAGCAACCAtgtctatgcttccaacttttgGCTTTACGCAAGAGCAAGTTGCGTGCGTCTGCGAGGTCCTCCAACAGGGTGGAAACATCGAACGGCTCGGGCGATTTTTGTGGTCTTTACCCGCGTGTGAGCACCTCCACAAAAATGAAAGTGTTCTCAAAGCTAAAGCTGTGGTCGCCTTTCACAGAGGCAATTTCAGAGAGCTTTATAAAATCCTTGAGAGCCACCAATTTTCCCCTCACAATCACCCGAAGCTGCAACAGCTTTGGCTCAAAGCACACTACATCGAGGCGGAGAAGCTCCGAGGCCGCCCTCTCGGGGCTGTGGGAAAGTACCGCGTCCGCAGAAAGTTCCCCCTGCCTCGGTCTATCTGGGACGGCGAGGAGACAAGTTACTGTTTCAAAGAGAAGAGCAGGAACGTACTCAGAGAATGGTACACGCATAACCCCTACCCTTCCCCGCGGGAGAAGAGGGAGCTCGCCGAGGGCACAGGGTTGACAACCACACAAGTCAGTAACTGGTTCAAAAACAGACGGCAAAGAGACCGCGCGGCAGAAGCTAAGGAAAGGTACGAGGAAAACAACGAAAACTCCAACACCAACAGCCACAACCCATTGACTTCTTCCATGAATGGAAATAAAACACTTTTGGGGAGCTCAGACGACGACAAAACGCCCTCAGGGACTCCGGATCACATTTCCTCGAGCCCGGCAATGCTCCTCGCTTCAAACTCCGGGCTGCAGATGCACGGCCTCGCGCCTCCACCTGGGCCTAGCGCCATCCTCGTGTCCAGCCTTGACTCCGTGCACCATCATCACTCTTTGCACGACACTATACTGAACCCTATGTCGTCTAACCTGGTCGAACTCGGCTCTTAAACATGGGACCCTGTTGGGAAAGACCTTTCTGAGTGCACATGGATGTTTGAGAAAAGCTTCAGGCACTTGAGGCAAAAGGAAAGAACAGAGTCGGAAAAATGTGACACACGCCGTGAGAGGTGAGATGGTAGGCGTTTAGCTGAACAGGCTGGACTGAATGGTATTTTACCGGAATGTAATAACATGTCATACTGTTGAAAACGATAACAATAAAATGTCTTAATTCGTGTTACAATTATCGTTCTTATTTTAAGGGATACATATCAAGAGATGCATAAACTCCAAGTCAGGTATGCCCCATGTCCTTTCGTTTACACATAGGTTTTCCAAGAGAGCCCCATtcagtttgtttttgttttgggttATCATCGCTAAGTGTTTTACTATCATGAGAGCCGAATGTTAACGATTACAGActattatattttattatttgtattttgaaATCATTTGGAGAGAGACTGCGTGTAAACTCTGCGATTAATAACTAAACATAAACAAATAGATCCCACTACAGTTTTATATACACTTTACAATTATAACGAATAAACAGGAGAACTTGTTTAATTTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2153440 lncRNA downstream 13167 55967805 ~ 55968100 (-) True G1882413
TU2153408 lncRNA downstream 42569 55938239 ~ 55938698 (-) True G1882383
TU2153387 lncRNA downstream 57162 55923890 ~ 55924105 (-) True G1882362
TU2153382 lncRNA downstream 59946 55921101 ~ 55921321 (-) True G1882357
TU2153374 lncRNA downstream 63722 55916990 ~ 55917545 (-) True G1882349
TU2153589 lncRNA upstream 59903 56044755 ~ 56044975 (-) True LOC110503038
TU2153594 lncRNA upstream 69172 56054024 ~ 56054361 (-) True G1882563
TU2154107 lncRNA upstream 220407 56205259 ~ 56205533 (-) True G1883032
TU2154136 lncRNA upstream 283743 56268595 ~ 56268812 (-) True G1883061
TU2154137 lncRNA upstream 284697 56269549 ~ 56269752 (-) True G1883062
LOC110502996 mRNA downstream 777074 55190470 ~ 55204193 (-) True LOC110502996
XR_002470407.2 mRNA downstream 910121 55068829 ~ 55071146 (-) False LOC110502991
XR_002470409.2 mRNA downstream 910121 55068829 ~ 55071146 (-) False LOC110502991
XR_002470408.2 mRNA downstream 910121 55069915 ~ 55071146 (-) False LOC110502991
XM_021581354.2 mRNA downstream 1213602 54756179 ~ 54767665 (-) False LOC110502990
LOC110503038 mRNA upstream 59479 56044331 ~ 56059595 (-) False LOC110503038
XM_036960866.1 mRNA upstream 775227 56760079 ~ 56780244 (-) True LOC110503002
XM_021581369.2 mRNA upstream 871728 56856580 ~ 56886643 (-) False LOC110503005
XM_036960867.1 mRNA upstream 871728 56856580 ~ 56886643 (-) True LOC110503005
XM_036960871.1 mRNA upstream 922628 56907480 ~ 57068071 (-) True LOC110503039
TU2152307 other downstream 977643 55002766 ~ 55003624 (-) True G1881414
TU2151535 other downstream 1734581 54244782 ~ 54246686 (-) False G1880780
TU2151379 other downstream 1907318 54067787 ~ 54073949 (-) True LOC110503036
TU2149919 other downstream 2816916 53163242 ~ 53164351 (-) True G1879406
TU2149213 other downstream 3337758 52643088 ~ 52643509 (-) True G1878770
TU2154312 other upstream 621154 56606006 ~ 56610640 (-) False G1883219
TU2154381 other upstream 659155 56644007 ~ 56709888 (-) False G1883244
TU2154350 other upstream 715361 56700213 ~ 56709786 (-) False G1883244
TU2154362 other upstream 715361 56700213 ~ 56709786 (-) False G1883244
TU2154370 other upstream 715361 56700213 ~ 56709786 (-) False G1883244

Expression Profile