Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00053099 |
| length | 2009 |
| lncRNA type | read_through |
| GC content | 0.42 |
| exon number | 2 |
| gene id | XLOC_026698 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007114.7 |
| NCBI id | CM002887.2 |
| chromosome length | 62628489 |
| location | 43578975 ~ 43686469 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0090244 | Wnt signaling pathway involved in somitogenesis | biological_process |
| GO:0021797 | forebrain anterior/posterior pattern specification | biological_process |
| GO:0001743 | optic placode formation | biological_process |
| GO:0001756 | somitogenesis | biological_process |
| GO:0055001 | muscle cell development | biological_process |
| GO:0007257 | activation of JUN kinase activity | biological_process |
| GO:0030178 | negative regulation of Wnt signaling pathway | biological_process |
| GO:0046330 | positive regulation of JNK cascade | biological_process |
| GO:0007275 | multicellular organism development | biological_process |
| GO:0021877 | forebrain neuron fate commitment | biological_process |
| GO:0090090 | negative regulation of canonical Wnt signaling pathway | biological_process |
| GO:0009950 | dorsal/ventral axis specification | biological_process |
| GO:0009953 | dorsal/ventral pattern formation | biological_process |
| GO:0031101 | fin regeneration | biological_process |
| GO:2000054 | negative regulation of Wnt signaling pathway involved in dorsal/ventral axis specification | biological_process |
| GO:0007368 | determination of left/right symmetry | biological_process |
| GO:0048048 | embryonic eye morphogenesis | biological_process |
| GO:0001654 | eye development | biological_process |
| GO:0021999 | neural plate anterior/posterior regionalization | biological_process |
| GO:0030900 | forebrain development | biological_process |
| GO:0030910 | olfactory placode formation | biological_process |
| GO:0016055 | Wnt signaling pathway | biological_process |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0030877 | beta-catenin destruction complex | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0005515 | protein binding | molecular_function |
| GO:0042803 | protein homodimerization activity | molecular_function |
| GO:0008013 | beta-catenin binding | molecular_function |
| id | description |
|---|---|
| ko04310 | Wnt signaling pathway |
| ko04390 | Hippo signaling pathway |
| ko04550 | Signaling pathways regulating pluripotency of stem cells |
| ko05200 | Pathways in cancer |
| ko05210 | Colorectal cancer |
| ko05225 | Hepatocellular carcinoma |
| ko05226 | Gastric cancer |
| ko05217 | Basal cell carcinoma |
| ko05213 | Endometrial cancer |
| ko05224 | Breast cancer |
| ko05165 | Human papillomavirus infection |
| ko05010 | Alzheimer disease |
| ko05022 | Pathways of neurodegeneration - multiple diseases |
| ko04934 | Cushing syndrome |
| ko01009 | Protein phosphatases and associated proteins |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00052485 | lncRNA | downstream | 390405 | 43187194 ~ 43189085 (-) | True | XLOC_026695 |
| TCONS_00053098 | lncRNA | downstream | 552755 | 43024821 ~ 43026735 (-) | True | XLOC_026694 |
| TCONS_00053097 | lncRNA | downstream | 616256 | 42959068 ~ 42963234 (-) | True | XLOC_026692 |
| TCONS_00052483 | lncRNA | downstream | 832706 | 42548944 ~ 42746784 (-) | False | XLOC_026690 |
| TCONS_00052484 | lncRNA | downstream | 832706 | 42681982 ~ 42746784 (-) | True | XLOC_026690 |
| TCONS_00052486 | lncRNA | upstream | 79337 | 43661692 ~ 43686469 (-) | True | XLOC_026698 |
| TCONS_00051994 | lncRNA | upstream | 284430 | 43866785 ~ 43875129 (-) | True | XLOC_026702 |
| TCONS_00051995 | lncRNA | upstream | 296101 | 43878456 ~ 43889443 (-) | True | XLOC_026703 |
| TCONS_00053100 | lncRNA | upstream | 529190 | 44111545 ~ 44124370 (-) | True | XLOC_026708 |
| TCONS_00053101 | lncRNA | upstream | 750392 | 44332747 ~ 44335853 (-) | True | XLOC_026709 |
| TCONS_00051986 | mRNA | downstream | 223408 | 43352556 ~ 43356082 (-) | True | XLOC_026697 |
| TCONS_00051983 | mRNA | downstream | 597751 | 42964045 ~ 42981739 (-) | False | XLOC_026693 |
| TCONS_00051982 | mRNA | downstream | 610946 | 42918143 ~ 42968544 (-) | False | XLOC_026692 |
| TCONS_00051984 | mRNA | downstream | 611792 | 42964716 ~ 42967698 (-) | True | XLOC_026693 |
| TCONS_00051977 | mRNA | downstream | 1453835 | 42121166 ~ 42125655 (-) | True | XLOC_026686 |
| TCONS_00051990 | mRNA | upstream | 174826 | 43757181 ~ 43770876 (-) | True | XLOC_026699 |
| TCONS_00051991 | mRNA | upstream | 231464 | 43813819 ~ 43821381 (-) | True | XLOC_026696 |
| TCONS_00051992 | mRNA | upstream | 246190 | 43828545 ~ 43835055 (-) | True | XLOC_026700 |
| TCONS_00051993 | mRNA | upstream | 253203 | 43835558 ~ 43872889 (-) | True | XLOC_026701 |
| TCONS_00051996 | mRNA | upstream | 359677 | 43942032 ~ 43954971 (-) | False | XLOC_026704 |
| TCONS_00051981 | other | downstream | 713290 | 42866083 ~ 42866200 (-) | True | XLOC_026691 |
| TCONS_00051964 | other | downstream | 2267347 | 41312022 ~ 41312143 (-) | True | XLOC_026680 |
| TCONS_00051939 | other | downstream | 3049711 | 40526882 ~ 40529779 (-) | False | XLOC_026667 |
| TCONS_00051938 | other | downstream | 3049712 | 40526879 ~ 40529778 (-) | False | XLOC_026667 |
| TCONS_00051924 | other | downstream | 3420803 | 40154294 ~ 40158687 (-) | True | XLOC_026658 |
| TCONS_00052007 | other | upstream | 499268 | 44081623 ~ 44094226 (-) | False | XLOC_026707 |
| TCONS_00052055 | other | upstream | 3612782 | 47195137 ~ 47195234 (-) | True | XLOC_026732 |
| TCONS_00052070 | other | upstream | 5495407 | 49077762 ~ 49077879 (-) | True | XLOC_026748 |
| TCONS_00052082 | other | upstream | 6232842 | 49815197 ~ 49815287 (-) | False | XLOC_026760 |
| TCONS_00052087 | other | upstream | 6521716 | 50104071 ~ 50117962 (-) | True | XLOC_026764 |
