RNA id: XM_021581367.2


Basic Information

Item Value
RNA id XM_021581367.2
length 2299
RNA type mRNA
GC content 0.47
exon number 19
gene id LOC110503004
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 56829056 ~ 56843475 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCAGCCAGCCACGCAACACTAGAGCTACTGAAAACATGGCTGCTTCTGTACGGGTGAGGACGTGGAACAGCAAGGCTAGCTCAGTCAAACCCTGGCTCCTTCTTTTGACAGGGTTCATTTTATTGGGCGATGTAAATAGCGGGGTCATGGCAGCACCAGAACCGGGACAATGGAGTATTACAGTTGTCAATACCTCAAGACCATTACTTTTGAGGAAATCCATGTATAAAGACACTGATATCAAATTGAAAGTTGTGTCCTTTGGTTGTCCAGAGGAGATGACTTTTACCATTCAATGGTACTTGAAATACTATCCCTGCCACAATGAGTTCAATAATATTGAGGAAATGTATGAGAGGACGCCACTGAGTCGAGGACAGAGTATGGATCCTAACCCTCTAGGACAAGGGGAATGCATTGAGCACAAGCACAAGCCCTTGAGCTGCAACAATGACCTGCGATACTTCCCAATGCTAAATAAAGCCAAGGCAGAACCACGGCCAGTTGTCCCTCCCATGGAAGGAGCAGCACCGGGCTCAGATGAAAACTACACGAAGTGGACGATGGAGGAGTACGACAAAGTCGGCGGTCTGAAGAACGGCAGTGTGTCGCTTAAACATGACGTCATCGCCACCACGTGGAAGGACGGCCCCTATCTGCTGGTGGTGGTGATTAAGTCTAACAAACAGGAAGCCAACTGGAATCTAACAGTCAACGTCGTAATGAAAGGAACTCACGGCTACATCTCCATCACAGAATGGCCTCTCATGATCtTCTACATGGTGATGTGTACAGTGTACATCCTGTATGCGTTACTCTGGTTCCTGTGGGCTGCCTGCTACTGGAAGGACTTACTGCGGATCCAGTTCTGGATAGCTGGAGTCATCTTTCTGGGCATGGTGGAGAAGGCTGTGTTCTGTGCTGAGTACGAGAACACCAACGGTGTCGGGGCAGCTTCTCCAGGCCTGTTGATCTTTGCTGAGCTCATCTCTGCCCTGAAGAGAACCCTGGCACGGCTGCTGGTCATTATCGTCAGTCTGGGATATGGTATAGTCAAACCTCGACTGGGTACAGTGATGCACAGAGTGGTGGGACTAGGTGTGATGTACTTTGCCTTTGCTGCCATCGAAGGTGTGCTTAGGATCACTGGGgCGAAAGACTCTGACCTGGCTCTGTTGGCCAACATTCCTCTGGCTCTGCTTGACTCTTCTCTCTGCTGGTGGATATTTGTGAGCCTGGCTCACACTATAAAGACACTGAAGCTGAGGAGAAACCCAGTGAAGCTGTCTCTCTACAGACATTTCACAAACACACTCATCTTTGCCATTATAGCTTCAATCATTTTCATGGTGTGGACGACGAAAAAATTCAGACTAGCCGACTGTCAATCTGACTGGGTGGAGCTGTGGGTTGATGATGCCTTCTGGAGGTTCCTGTTCTCCATCATACTGCTGGTTATCATGTTCTTATGGAGACCCTCTGCTAACAACCAAAGATATGCGTTCACTCCACTGATGGATGACTCTGACGATGAGGAGATTGAGGAGTTCCTGGTGTCAGCTAATTTAGCTGATGGCATAAAGCTGAGAGCCTCCAACTTTAAGAGTGAGATGAACGGCTCAGCCAAGCCTTCAGGATCTAACCCGGATGAAGACTTGAAGTGGGTGGAAGAGAACATTCCTACCTCTCTAACAGACGTAGCGTTGCCCGTCCTTCTTGATTCAGATGAGGAAATCATGACTACAAAATATGAAATGTCCAAGATGGAGTAACATGGGAAATCTTCCTACTACCCACGATGGATGCAGAGCATCTCTTCCTTCTGAGATTGGTTCCTCCTGCATGGCATGGAAGAGACAGATCACCAGGAGTGCGACACCTATCCCGTCCTAGGCCTGTTTAGGCTGACAGTCAGACCTTTGTCTACAATACTACTGGGGCTTAACACCTCTGACTTGGCGATCAGCAGGGTCCTCCTATTCATTGGGTATCAAATGGACGAAAACTGATTTTAACAGGAggtactacctgaacttgtccaataagaaatgctggTTATAGTTTTCCGTTGCAAACATTTTTGCTGCAGTGTGCCCTAATGTGTTTagccctctcaccctctccacaAACCAAGACATAACAATTGAGTGTGTCCCAAAGTGCACCCTATtcggtgccttcggaaagtattcagactcctttactttttttcacatttcgttacgttacagccatattctaaaattgataaaatgttgtttttttccccctcatcaaactacactcaataacccataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2153955 lncRNA upstream 63401 56728623 ~ 56765655 (+) True G1882902
TU2153953 lncRNA upstream 100590 56728250 ~ 56728466 (+) True G1882901
TU2153712 lncRNA upstream 119264 56701366 ~ 56709792 (+) False LOC118943924
TU2154563 lncRNA downstream 53607 56897082 ~ 56897577 (+) True G1883403
TU2154568 lncRNA downstream 58682 56902157 ~ 56903028 (+) True G1883408
TU2154572 lncRNA downstream 80832 56924307 ~ 56935226 (+) True G1883412
TU2154574 lncRNA downstream 87803 56931278 ~ 56932341 (+) True G1883413
TU2154575 lncRNA downstream 91956 56935431 ~ 56935773 (+) True G1883414
XM_021581365.2 mRNA upstream 324 56812405 ~ 56828732 (+) True LOC110503003
XM_021581366.2 mRNA upstream 1956 56812404 ~ 56827100 (+) False LOC110503003
XR_005039274.1 mRNA upstream 119090 56702731 ~ 56709966 (+) False LOC118943924
XM_036960863.1 mRNA upstream 128072 56613066 ~ 56700984 (+) False LOC110503001
XM_036960864.1 mRNA upstream 128475 56613066 ~ 56700581 (+) False LOC110503001
XR_005039277.1 mRNA downstream 535654 57379129 ~ 57399437 (+) True LOC118943926
XM_036960877.1 mRNA downstream 656219 57499694 ~ 57540368 (+) True LOC110503012
XR_002470415.2 mRNA downstream 701800 57545275 ~ 57550796 (+) True LOC110503013
XR_005039135.1 mRNA downstream 727271 57570746 ~ 57588495 (+) True LOC110503040
XM_036959915.1 mRNA downstream 2021140 58864615 ~ 58865931 (+) True LOC118943835
TU2153723 other upstream 101862 56699238 ~ 56727194 (+) True LOC110503001
TU2153730 other upstream 141136 56673248 ~ 56687920 (+) False LOC110503001
TU2153880 other upstream 285800 56533617 ~ 56543256 (+) True G1882831
TU2153877 other upstream 290573 56529795 ~ 56538483 (+) True G1882830
TU2152255 other upstream 1825384 55002782 ~ 55003672 (+) True G1881371
TU2154622 other downstream 168562 57012037 ~ 57013218 (+) True G1883457
TU2156976 other downstream 2018739 58862214 ~ 58864502 (+) True G1885587
TU2158064 other downstream 2880789 59724264 ~ 59736661 (+) True G1886557
TU2158065 other downstream 2884271 59727746 ~ 59736471 (+) True G1886558
TU2158068 other downstream 2906243 59749718 ~ 59786095 (+) False G1886560

Expression Profile