RNA id: TU2154750



Basic Information


Item Value
RNA id TU2154750
length 467
RNA type TUCP
GC content 0.56
exon number 3
gene id LOC110503007
representative True

Chromosome Information


Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 57071327 ~ 57116725 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GAAAGACTAGCGACCAGTAAGAATGCTGGATGCAGgaattacattttaaaacaatatatttcatttgGAAGTACAGAATCTGGGTGATAATATGTTTATGAAACTAAAGCAAAAGATGAACGAGGAGCAATCGGCGCAAAGGAATGCGCAGTCACCGCAACAGGCCCAGCAGAGAGGCACCGCAGGATCCCCCAGAGGAAGCCTCAATGGAGATGGGAGGGCTTCTCCTCAGagagaggagtccCAGTCGTTTACCCAGAAGCTCCGTGTCCCCTCTGTGGAGTCTCTCCTCCTCCGCGGTGCCAGCCGGGCCGAGGGCCTCTTCCGTTCCCCGCCCAAAGAGGGCTTGAACCGCAGCCCCTCTCTCAACTCCCTCACCCCCATGGGGGAGAATGAGGCCCTGGCCTCCCCCTCTGCCAACCCTCCCACCCCAGCCTACGACCCTCCATCAGACATTGAGAGCGAGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2154855 lncRNA downstream 2484 57108428 ~ 57109649 (-) True LOC118943925
TU2154839 lncRNA downstream 52238 57059616 ~ 57059895 (-) True G1883659
TU2154809 lncRNA downstream 98866 57011840 ~ 57013267 (-) True G1883632
TU2154751 lncRNA downstream 206715 56903371 ~ 56905418 (-) True G1883574
TU2154557 lncRNA downstream 220415 56891414 ~ 56891718 (-) True G1883397
TU2154857 lncRNA upstream 802 57117495 ~ 57118395 (-) True G1883676
TU2155103 lncRNA upstream 87627 57204320 ~ 57204634 (-) True G1883892
TU2155109 lncRNA upstream 97564 57214257 ~ 57214498 (-) True G1883898
TU2155115 lncRNA upstream 112516 57229209 ~ 57229477 (-) True G1883904
TU2155118 lncRNA upstream 115440 57232133 ~ 57232408 (-) True G1883907
XR_005039275.1 mRNA downstream 1268 57109060 ~ 57110865 (-) False LOC118943925
XM_036960871.1 mRNA downstream 44062 56907480 ~ 57068071 (-) True LOC110503039
XM_021581369.2 mRNA downstream 225490 56856580 ~ 56886643 (-) False LOC110503005
XM_036960867.1 mRNA downstream 225490 56856580 ~ 56886643 (-) True LOC110503005
XM_036960866.1 mRNA downstream 331889 56760079 ~ 56780244 (-) True LOC110503002
XM_036960874.1 mRNA upstream 222834 57339527 ~ 57365837 (-) False LOC110503010
XR_005039276.1 mRNA upstream 222834 57339527 ~ 57381623 (-) False LOC110503010
XM_036960872.1 mRNA upstream 222834 57339527 ~ 57381651 (-) False LOC110503010
XM_036960873.1 mRNA upstream 222834 57339527 ~ 57381651 (-) True LOC110503010
XM_036960875.1 mRNA upstream 272917 57389610 ~ 57433153 (-) False LOC110503011
TU2154381 other downstream 402245 56644007 ~ 56709888 (-) False G1883244
TU2154376 other downstream 402245 56700213 ~ 56709888 (-) False G1883244
TU2154351 other downstream 402245 56706114 ~ 56709888 (-) False G1883244
TU2154350 other downstream 402347 56700213 ~ 56709786 (-) False G1883244
TU2154362 other downstream 402347 56700213 ~ 56709786 (-) False G1883244
TU2155344 other upstream 473351 57590044 ~ 57591562 (-) True LOC110503041
TU2155498 other upstream 617664 57734357 ~ 57735498 (-) True G1884227
TU2156522 other upstream 1117526 58234219 ~ 58242567 (-) True G1885150
TU2157260 other upstream 1972980 59089673 ~ 59090564 (-) True G1885863
TU2157736 other upstream 2232608 59349301 ~ 59351870 (-) True gpr75

Expression Profile