RNA id: TCONS_00052486


Basic Information

Item Value
RNA id TCONS_00052486
length 513
lncRNA type read_through
GC content 0.41
exon number 2
gene id XLOC_026698
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 43578975 ~ 43686469 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAGTAAAAGAAAGTACTCCGGGGTGGCAAGTAGGCGACTGCGCCCAGTCATGGCGGACGGCAGAAATCACAGCGGAGGAGACACCCAGCAGGAGAGGCAGATTCGGATGGACACAGTCAATAACCTGGAATGGACCAATTTATTGTGGACAATCACCTTGGATTTGTTGAAAAAGCAGAGGATGCAGTTTTTACTGGGACTTGATATAGTCAATGGTATTGACATGGAACCTTCTGTCAGTGGAGGGAGAGTTGGGGGATGCCAGAAAACACAGGACAGATATTTACAACTTCCTCAGGTAAAGCAATTCaatattttcttctgtttttacCTTTCTTTCTGCCAAATGAAGTAGGCTATGGGTTCAAATCTTACAGAGTGCACATTTATAATCATGTATGGCTAGATTCTAAGTACTTTTCATGACAATTAGAGTTTTGCTGACTTATTTATTTAGAGTTACAATCAGTATTGTTCAAACTTTTGTGGTTggtacattttcattttcttt

Function

GO:

id name namespace
GO:0090244 Wnt signaling pathway involved in somitogenesis biological_process
GO:0021797 forebrain anterior/posterior pattern specification biological_process
GO:0001743 optic placode formation biological_process
GO:0001756 somitogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0007257 activation of JUN kinase activity biological_process
GO:0030178 negative regulation of Wnt signaling pathway biological_process
GO:0046330 positive regulation of JNK cascade biological_process
GO:0007275 multicellular organism development biological_process
GO:0021877 forebrain neuron fate commitment biological_process
GO:0090090 negative regulation of canonical Wnt signaling pathway biological_process
GO:0009950 dorsal/ventral axis specification biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0031101 fin regeneration biological_process
GO:2000054 negative regulation of Wnt signaling pathway involved in dorsal/ventral axis specification biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0048048 embryonic eye morphogenesis biological_process
GO:0001654 eye development biological_process
GO:0021999 neural plate anterior/posterior regionalization biological_process
GO:0030900 forebrain development biological_process
GO:0030910 olfactory placode formation biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0030877 beta-catenin destruction complex cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005515 protein binding molecular_function
GO:0042803 protein homodimerization activity molecular_function
GO:0008013 beta-catenin binding molecular_function

KEGG:

id description
ko04310 Wnt signaling pathway
ko04390 Hippo signaling pathway
ko04550 Signaling pathways regulating pluripotency of stem cells
ko05200 Pathways in cancer
ko05210 Colorectal cancer
ko05225 Hepatocellular carcinoma
ko05226 Gastric cancer
ko05217 Basal cell carcinoma
ko05213 Endometrial cancer
ko05224 Breast cancer
ko05165 Human papillomavirus infection
ko05010 Alzheimer disease
ko05022 Pathways of neurodegeneration - multiple diseases
ko04934 Cushing syndrome
ko01009 Protein phosphatases and associated proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053099 lncRNA downstream 79337 43579490 ~ 43582355 (-) False XLOC_026698
TCONS_00052485 lncRNA downstream 472607 43187194 ~ 43189085 (-) True XLOC_026695
TCONS_00053098 lncRNA downstream 634957 43024821 ~ 43026735 (-) True XLOC_026694
TCONS_00053097 lncRNA downstream 698458 42959068 ~ 42963234 (-) True XLOC_026692
TCONS_00052483 lncRNA downstream 914908 42548944 ~ 42746784 (-) False XLOC_026690
TCONS_00051994 lncRNA upstream 180316 43866785 ~ 43875129 (-) True XLOC_026702
TCONS_00051995 lncRNA upstream 191987 43878456 ~ 43889443 (-) True XLOC_026703
TCONS_00053100 lncRNA upstream 425076 44111545 ~ 44124370 (-) True XLOC_026708
TCONS_00053101 lncRNA upstream 646278 44332747 ~ 44335853 (-) True XLOC_026709
TCONS_00053102 lncRNA upstream 1853317 45539786 ~ 45543451 (-) True XLOC_026716
TCONS_00051988 mRNA downstream 11503 43579490 ~ 43650189 (-) False XLOC_026698
TCONS_00051989 mRNA downstream 14959 43580962 ~ 43646733 (-) False XLOC_026698
TCONS_00051986 mRNA downstream 305610 43352556 ~ 43356082 (-) True XLOC_026697
TCONS_00051983 mRNA downstream 679953 42964045 ~ 42981739 (-) False XLOC_026693
TCONS_00051982 mRNA downstream 693148 42918143 ~ 42968544 (-) False XLOC_026692
TCONS_00051990 mRNA upstream 70712 43757181 ~ 43770876 (-) True XLOC_026699
TCONS_00051991 mRNA upstream 127350 43813819 ~ 43821381 (-) True XLOC_026696
TCONS_00051992 mRNA upstream 142076 43828545 ~ 43835055 (-) True XLOC_026700
TCONS_00051993 mRNA upstream 149089 43835558 ~ 43872889 (-) True XLOC_026701
TCONS_00051996 mRNA upstream 255563 43942032 ~ 43954971 (-) False XLOC_026704
TCONS_00051981 other downstream 795492 42866083 ~ 42866200 (-) True XLOC_026691
TCONS_00051964 other downstream 2349549 41312022 ~ 41312143 (-) True XLOC_026680
TCONS_00051939 other downstream 3131913 40526882 ~ 40529779 (-) False XLOC_026667
TCONS_00051938 other downstream 3131914 40526879 ~ 40529778 (-) False XLOC_026667
TCONS_00051924 other downstream 3503005 40154294 ~ 40158687 (-) True XLOC_026658
TCONS_00052007 other upstream 395154 44081623 ~ 44094226 (-) False XLOC_026707
TCONS_00052055 other upstream 3508668 47195137 ~ 47195234 (-) True XLOC_026732
TCONS_00052070 other upstream 5391293 49077762 ~ 49077879 (-) True XLOC_026748
TCONS_00052082 other upstream 6128728 49815197 ~ 49815287 (-) False XLOC_026760
TCONS_00052087 other upstream 6417602 50104071 ~ 50117962 (-) True XLOC_026764

Expression Profile

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