RNA id: XR_002470415.2


Basic Information

Item Value
RNA id XR_002470415.2
length 1717
RNA type mRNA
GC content 0.41
exon number 3
gene id LOC110503013
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 57545275 ~ 57550796 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tacaacacaacccactaatagcctaacacataacacacggctgtctgtgcgggtcgctacaaTACTAATACTTCTGTTGTTAGGGCTACTAATAATGACTCACCACAAAGTTAAACTTCAGGCTTCTTCAATATATAGTTTTGACAGGCTACTGAGTATTTGTGAGAAAGACTATCGTAAAGagttcccagttgtcttgaaagcaccatcaatccagagaatgccagactttgatgacaaaattttgACAAAATGTGCCCACAAGGACTGcagcaccaccttcctgttcaagtgagcatggcacaagGTCCATTACCAGCCTTCACATCTCTCCTCCTCAAATCTGTGGACCTGGCCAGGGGGAGGCCTTTTACGAGGGTGGATGAGGCAGCAATTCTAGCATTAGGGGGTTTGCTTGTTGGTAGGTGCCGCTTAGCTGTCCTCTGAGCTCCCTTGTTGTTTCTGGATGGAGCTGGCTTCAGGTTCTTGTCTACAGAGGGACACACAGATAGTGGCTTATTATAACACATTACACAAAGGGAAATTGCTATAGTCAAACACACAAATGTGAATTTAAGAGAACTCACCTTTGGGGGGGTGTCTGTTCAGAACTGGGGGCAAACATGGACGGCTGAATTTCAGgtgtgagggaggggaggggggacaaCCCGGTTGGAGCTGGTATCGGTTTCTTGTCTACAGAAGGACAAACAGGCATTAGTGTCTTAATGAACACAATATATTGCTATATTTAAACGTGATTGTTACAGGTTATTTTAACGAACACATTCATTTTTTGGGTAATttattgtttttcttttcattAACAAGttgtattgattatttattgtTTGAATTGTTTATTTTTGTAAGATTAACTACATTGatggaataaaaaaaatatataataaaaaataaataaagacctCTCCATTGGGGAATTGCCTGTTCAGAACTGGAGGCCGCCATGGACAGCTACATGTCAGGTGTGGAGGTTGGTCCTTATTTTCCAACACGCCACtgggctctctcctctctttccctcaggTACCTTTTTGTTCTGTCACACTCCAGTTGGGCCTTTTgcgctttcctcctcctccttctcaagGTGTTGAGCTGCCTTATCCAGCCTATGTAGCTGTGATAACCAAAATAAAGAATTAGCCGATACACTGAAAGGGTGGATAACAAATATTCCGATATATAGAAACTAATGTTAAAACATGTTACCTTCTATGTTTACGGTCTGTAGAGTTATAGACTGCATTGATGATAGTCCCAAAGCCTGCCCTATTGAAACCTCTATTCATATTGAGTAATAGATCTTGGGAAACTGAGACTATCCCTGAGACTCTCCCAAACTGCAACAAGTGAAGATGTGCAGCAACCAATCGGAGATTAGTGGGCATCGCTGGGGGGGTAGACTCCCTGCTGTCACCtgtagtatctgctggtcatctcaaATCTCTGAGTAGAACCTGACtatttttttgttgtgtgtgttacaACTCTGTAAACAGTGTGTTTATTGACTAGGACAATTATGACTGATTTACTTGTCTTTTTATTTGTTGAACATTATAGAGTGTAtgacaaataaaaatgaattTCAAGGGAGAAAAAGAGCTTGcattgaattatttatttcacagGGAATGTCATGTGTGCACCAACCCAGTATGATGTCCCCTACACCTACTGTACAAGTTAAAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2155074 lncRNA upstream 49128 57495920 ~ 57496147 (+) True G1883863
TU2155061 lncRNA upstream 71043 57473996 ~ 57474232 (+) True G1883850
TU2155060 lncRNA upstream 71880 57473168 ~ 57473395 (+) True G1883849
TU2155059 lncRNA upstream 73633 57471348 ~ 57471642 (+) True G1883848
TU2155054 lncRNA upstream 85416 57459441 ~ 57459859 (+) True G1883843
TU2155090 lncRNA downstream 8264 57559060 ~ 57559268 (+) True G1883879
TU2155092 lncRNA downstream 10940 57561736 ~ 57562058 (+) True G1883881
TU2155329 lncRNA downstream 39249 57590045 ~ 57590267 (+) True G1884093
TU2155331 lncRNA downstream 42364 57593160 ~ 57593406 (+) True G1884095
TU2155335 lncRNA downstream 45750 57596546 ~ 57596777 (+) True G1884099
XM_036960877.1 mRNA upstream 4907 57499694 ~ 57540368 (+) True LOC110503012
XR_005039277.1 mRNA upstream 145838 57379129 ~ 57399437 (+) True LOC118943926
XM_021581367.2 mRNA upstream 701800 56829056 ~ 56843475 (+) True LOC110503004
XM_021581365.2 mRNA upstream 716543 56812405 ~ 56828732 (+) True LOC110503003
XM_021581366.2 mRNA upstream 718175 56812404 ~ 56827100 (+) False LOC110503003
XR_005039135.1 mRNA downstream 19950 57570746 ~ 57588495 (+) True LOC110503040
XM_036959915.1 mRNA downstream 1313819 58864615 ~ 58865931 (+) True LOC118943835
XM_036960895.1 mRNA downstream 1785667 59336463 ~ 59345077 (+) False LOC110503019
XM_021581399.2 mRNA downstream 1785944 59336740 ~ 59345077 (+) True LOC110503019
XM_036959916.1 mRNA downstream 2030303 59581099 ~ 59581875 (+) True LOC118943836
TU2154622 other upstream 532057 57012037 ~ 57013218 (+) True G1883457
TU2153723 other upstream 818081 56699238 ~ 56727194 (+) True LOC110503001
TU2153730 other upstream 857355 56673248 ~ 56687920 (+) False LOC110503001
TU2153880 other upstream 1002019 56533617 ~ 56543256 (+) True G1882831
TU2153877 other upstream 1006792 56529795 ~ 56538483 (+) True G1882830
TU2156976 other downstream 1311418 58862214 ~ 58864502 (+) True G1885587
TU2158064 other downstream 2173468 59724264 ~ 59736661 (+) True G1886557
TU2158065 other downstream 2176950 59727746 ~ 59736471 (+) True G1886558
TU2158068 other downstream 2198922 59749718 ~ 59786095 (+) False G1886560
TU2158069 other downstream 2212517 59763313 ~ 59786095 (+) False G1886560

Expression Profile