RNA id: XM_036960878.1


Basic Information

Item Value
RNA id XM_036960878.1
length 3433
RNA type mRNA
GC content 0.49
exon number 14
gene id LOC110503041
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 57590001 ~ 57616121 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGCCTGAAGACGGTTTTATTGGTTTTCTCTGGAGAAAGTCACAGTTGGGGGAAGGGGGGAGCGGTTGACAAAGCGCCCAGGTAGCATAGACTTCCATGATGGCACCAGCCCCGCGGACGGTGTGGGTTCTTCTCGCGCTGTCCGGTGTCCTGAATGTGCGCTCCTGTTGGACTTTTACTTGTCCTTCCATTTGCGAATGTTCAATGAAGAGCGATACATGTACCACAAACGGGAGAGAAACGGGAGAGAAACTCAGCTGCACGAGGGAAACGCAACTAAGGTCCGGAGTCGCTCCTTCGTTTATTCGAAACGTAAGACTAATTCATCTGCCATTGACAGAAGTTTCAAGCAATGCCTTCAGGGGACTGATCAACGTGTCCAGAATTGAGATCTCTCAGAGTGACTGCATCAGGAACATAAGAAACCAtgcattcctctctctccacagcttgGCTGAGATACAGATACAGAACATCAGAAATCTGATCAGTATAGAGAAGGGGGCCTTCACTGATCTGCCCAGGCTGAGATACCTgAGTATCTGTAACACAGGAATAATACATTTTCCTGACTTCTCCACCATGTCCTCTTTGGTGATACTGGATAACTTCTTCCTTGAGCTGGGAGATAACATGCATCTCGACAGCATACCTGCCAATGCCTTTCAAGGTATCACAGAGGAGAGTGTCTACATGAAAATTATAAAAAATGGATTCAAGGAAATCAGGTCACACGCTTTCAACGGAACAAATCTGGATAAACTGATTCTGAAAGGAAACAGGTATCTGAGGAACATCCATGAAGATGCCTTTGAGGGGGCCTCAGGGCCAATTATGCTTGACATCTCCTCCACAGCTCTCCACACCCTCCCCCGTCGAGGCTTGGGACATTTGAAGGTCCTGATTGCCCGTTCTACCCCTTACCTGAAGACTCTACCCCCTCTGGAAAGCCTCCTAGAGCTAGAGGTGGCAGAGGTCACTTACCCCAGCCACTGCTGTGCCTTCCACACCTGGCGACGCAAACACAGGGAAAAAGTTATCCTTGCACTCTCTCCGAACCTCAGAAGGCTGTGCGATGACGATAAAATCATGGACCCATCAGCAGACAATGTAACAGACCTGTACGACATCAACTTCCAATACCCAGACCTGCAGCTGAGCCTGTGTCCTGGACCCTTCCAGTGCACCCCAGAGCCTGATGCCTTCAACCCCTGTGAGGACCTGCTGGGGTACTCCTTCCTCCGTGCAGTCACCTGGCTCATTACTGTGTTCGCTGTGGCTGGGAACATGACTGTGCTGATTGTACTGATCACCAGTCACCAGAAGCTTAATGTCTCCCAGTTCCTGATGTGTAACCTGGCCTTCGCAGATCTCTGCATGGGGCTCTACCTCCTCCTCATTGCAGCCATGGACTACCACTCCCGCAAGGAGTACTATAATCACGCTACGGACTGGCAGACGGGCGGGGGCTGTGGCGTGGCGGGGTTCTTGACGGTGTTCGCCAGCGAGCTATCTGTCTACACGCTGACCATGATAACGTTAGAGCGGTGGCACACCATCACCAACGCCATGCACATCAACAAGAGGCTGCGGCTGAGGCATGTGGTGATCATGATGGCTGGAGGGTGGGGTTTCTCCCTATTGGCCGCTCTGCTTCCCATCCTGGGGGTCAGCAGCTACACTAAGGTGTCGATCTGCCTGCCCATGGACATCGAGTCCCTAGCCTCTCAGGTGTATGTTgtagccctcctcctcctcaacgtCGCTGCCTTCTTCATCATCTGCTGCTGCTACGTACGTATCTACATGTCCATCCACAACCCCGACCTAGCAACCCGCCACGGCGACGCCAGGATCGCCAAGCGCATGGCCATCCTCATCTTCACCGACTTCCTCTGCATGGCACCCATCTCCTTCTTTGCCATCTCGGCGGGTCTCCACATGCCCCTCATCACCATCTCCCACTCCAAGATCCTCCTCGTCCTCTTCTACCCAATCAACTCCCTCTGTAACCCCTTCCTCTACACCATATTTACTCGAGCATTTCGGAAGGATTTGTGTCTATTGTTGAGTCGCTGTAGTTGTTGCCATGCCAGAGCGGAGTTCTACAGGGCACAGAACCTGGCAACACACACTATACCGCCTAAGGGTAGGTCTACATCCCCCAGAAAGGCTCACTCTTTCAGGTTCTATGCCTACCACATCAAGATGCAGGGATGCTTCCTCAGCAAGGGAGGTGGAGTGTGTGACTAGTCTCAGTCAGTCAGAACTAAGGGTACAGCCACATTGAGATTTTGGTTGCGTggccctgctcagacgttgcatcAACCAATGGCTGCGTGCCACATCATTGACAGTGTCGTCAACTGACAGATCGCTGTAACATATGTGGTTAGCTAATACGTAAAATGCCTATCCAGacattgtaagatctggcatgcgtcAGCAACGCCTGGGCAGAGAACACACCCTGAAAATTCCAGATTGAGCCAATGGTTTTTCAATGTGAGTCATCCGTTATCCAGATGAATGACAACAGATTGTCTGTCAAAAATACACAAAGCATTCAATTCAACTTTTGATGAGAAAAAACGGGCAATGATGTAAGTCATATACAACTTCATCCTTGTTTATGCATCTCGTTCAGGCCCTGTGATAGGCTAGCGTCCTGTCCAAGGGTTGTACTGTACATtaagctgcctcacactacagaaataaGAGAGGCTCCTGCCTCTATGAGCTTTTCTGGCTTGCAGAAGCCACGCCTCAATGTGGCCATAGCCTTAATCTCTGCTGTAACAAGGTGATTGAGCATCTGTGCCCCTCCcttgtcgattatggcagccccccgcacctctctgattcagagggggtgggttaaatgcggaagacacatttcagttgaatgcatttagttgtacaactggtatccccctttcccgtcattgtaaatgacatcattgtaaataagcatttgttcttaactgacttgccttgttaaataaaggttcaattataaaaataaagacaaGCACATGGGAGTTCTCTGGGCAGGCCATATCAGGGAAGGAGCTGCTGCCGGCCTCCAAGCTGCCATGCTGGTTTGGCGTGAACGTGTTTTAGAGTATTGTTGTTGAGTGTAATAATGTAAAAAGTAAagtgcattgtttgtaacttgaTGTGGCAGATTGGAGCCCAACAAGTTATAGCACAACCTTTTCATTGCTAATACTGTATTTTTCCTTGTGTACATTTTAAAGGGGAAGGCCCGTTTGTATATGTGTACATTTTAAAGGGGAAGGTCAGTTTGCATGTGTACATTTTATAGGCCAGTTTGTATTTACCTTAAGTCTGATGCATTGGTAGCTTATAGTAATGTCAACACGTGCATTTCCCTTATGTTTAATTGAAACTTGTAATAAACTATATTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2155301 lncRNA downstream 15622 57574112 ~ 57574379 (-) True G1884073
TU2155297 lncRNA downstream 20776 57568865 ~ 57569225 (-) True G1884069
TU2155284 lncRNA downstream 36940 57552828 ~ 57553061 (-) True G1884056
TU2155266 lncRNA downstream 59709 57529361 ~ 57530292 (-) True G1884046
TU2155252 lncRNA downstream 102392 57487293 ~ 57487609 (-) True G1884032
TU2155365 lncRNA upstream 9384 57625505 ~ 57625910 (-) True G1884129
TU2155370 lncRNA upstream 10886 57627007 ~ 57629531 (-) True G1884132
TU2155375 lncRNA upstream 16744 57632865 ~ 57633217 (-) True G1884136
TU2155395 lncRNA upstream 34146 57650267 ~ 57650628 (-) True G1884154
TU2155443 lncRNA upstream 76759 57692880 ~ 57693133 (-) True G1884195
XM_036960876.1 mRNA downstream 156545 57389610 ~ 57433456 (-) True LOC110503011
XM_021581375.2 mRNA downstream 156551 57389610 ~ 57433450 (-) False LOC110503011
XM_036960875.1 mRNA downstream 156848 57389610 ~ 57433153 (-) False LOC110503011
XM_036960872.1 mRNA downstream 208350 57339527 ~ 57381651 (-) False LOC110503010
XM_036960873.1 mRNA downstream 208350 57339527 ~ 57381651 (-) True LOC110503010
XM_036960890.1 mRNA upstream 412537 58028658 ~ 58372503 (-) False LOC110503044
XM_036960891.1 mRNA upstream 412537 58028658 ~ 58372503 (-) False LOC110503044
XM_036960885.1 mRNA upstream 412537 58028658 ~ 58372504 (-) False LOC110503044
XM_036960886.1 mRNA upstream 412537 58028658 ~ 58372504 (-) False LOC110503044
XM_036960880.1 mRNA upstream 412537 58028658 ~ 58767213 (-) False LOC110503044
TU2154750 other downstream 473308 57112133 ~ 57116693 (-) True LOC110503007
TU2154376 other downstream 880113 56700213 ~ 56709888 (-) False G1883244
TU2154351 other downstream 880113 56706114 ~ 56709888 (-) False G1883244
TU2154370 other downstream 880215 56700213 ~ 56709786 (-) False G1883244
TU2155498 other upstream 118236 57734357 ~ 57735498 (-) True G1884227
TU2156522 other upstream 618098 58234219 ~ 58242567 (-) True G1885150
TU2157260 other upstream 1473552 59089673 ~ 59090564 (-) True G1885863
TU2157736 other upstream 1733180 59349301 ~ 59351870 (-) True gpr75
TU2158377 other upstream 2350241 59966362 ~ 59966666 (-) True G1886825

Expression Profile