RNA id: XM_036960885.1


Basic Information

Item Value
RNA id XM_036960885.1
length 4469
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC110503044
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 58028658 ~ 58767213 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atctctctctctctccctctccttctcttgtgCATGTCTTTCTGAAACTGTGCTCGCTCGCAGTTTCTCAGCCTGAGTGTGTGAGTGGCTCCGTAATGCAGACCAGCCGCTCTCTCTCAGGTGCTGCCGCGTTGTTGCCTCTCCACTGAGTCTTGCAGAGAGTGTAGAGGGAACCTCTAGGAGCGTGTCTTGATACCCGTCGCAGGTGCAACCATTATAGTACCATCCTCTCGACGTTGCAGCTGCTGCCCACCACCACAGGCAAATGAGAAAGCGTTACTTCGGATTCACTCGAAATCTTTTGGACATCCTCTGAAAACATACAGGAGGAACATACAGGAGGGTAAACTTGGAAGGAGGGAATGTTATATTTGCTTTGATGAAGAAGAAGATTTTGAAACTCTATATATGTGGTGTTTTTTACGTCAGATTCCGAGGGTGAAAAATCGATGTGGATTTTCTGGAGTATTCTCATTTTTGGAGAGGAGAAAAGTATGCATTTGATTCTGTGAGCTCTTCTTCGCAGAAGAAAGAGTGAgcaaaaaggagagagagtgcGAGCGAGGAAGTGTGTTAGGGGAATTGGAGCAGTGTGGGATTTCTTAGACCCTGTTTGAGGAGTGTGTCCTAATTTCATGAGTGCATAtttcttccttctctctcattctttccaCAATGATTGATCATACTTCTACCACAGTCCCCTTGGTATCCTTGCAGATTTCctaaactactaaactaccgtAAACAGCAAGAAAGTTCTCTATTCTCTTCTCAATCTAATTGACTCTTTTCTGCAGTGGATTTTCTGTGGTTTTGTTGGTCAGTCTGCAGTGTGTGTCCTGGGGCTTGTGAGTGGTGAGAGAGAGTTGGGCTGGCAGGGCACTAAGGGGACTATGGGCCGTCGGGCTCATCACTAAGGTCCCAAATCTTGATACTCAACTTTCCTTGCTGGCCTCTCAGGGAATCATGTTGGGAGGCTGGAGGACACAGCaatcccccacccccccaccctcgAGGCCCAGGCAGGAGCCCCTCTGCTGGGACTTGACCTCGTCTGTCTTCCTTGTCCGCTTGGTTCTCTGGATGACTGCTCTAGCCCTGGGGTGTGTGGCCGGATCGGGTCCTGACTCGGGGCCACCAGGGGGGGCCACAGGAGCAGTGGAGGGCCTCCACCACATTCACCTCAACCATGGGGGCAAGCGTCACCATTCCGTGCCTATTGCCCTCCATAGATGGCCTGCCGCCTTGCTAAGAGCAGGCCACAcTGGAACTACTTATATATTTGGCCGTGACGGTGGACTAATCACGTATACATGGCCTCCCAATGACAGGCCCAGCACGCGGGCAGACAGGCTGGCCATAGGTTTCAGCACACAGCTAGAGGATGCTGTTCTGGTGAGGGTGGACAGCTCATCTGGCCTTGGAGACTACCTGAAGCTACACATTGAAAAAGGAAACATTGCAGTTATATTTAATGTTGGAACGGACGACATAAATATCGAGGAGACAGCAAAGTTTGTAAATGATGGAAAGTACCATATAGTGAAGTTTACTCGGAGTGGCGGTAACGCCACACTACAGGTGGATGACCTACCTGTCATAGAGCGCTATCCCACAGGCAACAATGATAACGAACGCCTGGCGATTGCTAGACAGCGAATCCCATATCGACTTGGTCGAGTAGTTGACGAATGGCTACTCGACAAAGGTCGGCAGCTCACTATCTTCAACAGCCAGACCACCATACAGATAGGtggctgggacagggacaggagtCGCTCGTTTCAGGGCCAGCTCTCAGGCCTCTACTATAACGGGCTGAAGGTGTTCAACATGGCCACTGAAGGAGATCCTAACATCCGCATCCAGGGGAGCGTGAGACTGGTGGGAGAGTCACCCTCTTCCATCACGCCACAGTCCAGTGCCAACACGGGCAACCGGTCGGAGACGTCCACCTCCATTATGGAGATCACCACGACGACGGCATCCAGTAGGAAAGTGAAGCAGACGACGCCACGGGAACCTCGGCAGACGACGGATGATCTGCCGGTGGCATCTGCGGAGTGTCCGAGCGATGACGAGGACATTGATCCCTGTGAGCCGAGCTCAGGTGGGTTAGcTAACCCAACAGGCCCGGCAGTGAAGGGCTACCCAGGTCCATCGGAGGGGGTGTTCCGTGAGTCAAGCAGTACCACAGGGATGGTGGTTGGCATCATAGCGGCAGCCGCTCTCTGTATCCTCATCCTGCTCTACGCCATGTACAAATACCGCAACCGGGACGAGGGATCTTACCATGTGGACGAAAGCCGTAACTACATCAGTAACACATCGCAGTCCAACGGGACGCTGGTGAAGGACAAACCGCCGAACGCAGCCAAGACCTCCTTTAAGAGCAAGAAGAATAAGGACAAGGAGTATTACGTGTGATCCTTACTGTCTCTGGTCTTCGCCACTGGCCCGACAAACTTTTTGACTCGAGAAGACCAATCAGGAGATCAGAAGACCACTAAAAAGTGTATAATAATGAACAAACGAAATTCAAcaaaaactacaaaataacattTTGTCTTTCATTTTACCCAAGACATGGTGGGATGATGTTATACCCGAATGCCAAATGGACTAAAAAATACAACAGAACATCTTCCTTTAGATTCTTAAAACCAACAAACTGGGCTTTAGGAAATAGCACCAGGGAGATAGAGGTACTCTATTGGACTATACTGAAGAGGGTTTGGAACTGCAGAATAATCAACAGGAGTACCTATACATCTTAAACCAACAAACAATCCAACCAATTGTTCAGTTTTATTCAGTTTATTACCAGGATATTGGTTGTCCAAACGGGAGAAGAGAGATGCAAACGGACGAGGAGAGGTATACAATTGAGGAAGATATATTACAACTATAAACTCCAATGTTTAATTTACATATCCTGTGTTTGTGTTAACTGGGAACTTTTCTACGAGAAAATACTTAAAACGCACAAATGAGGTAAATAAagaaaacccaacaccaaacatgTGCAACAACAGATGACGAGTGAATAGAAAAGAGATGGCATAATGGGAAGGCAAGGTAACAGTGAAGAAGAAAGTGAAAGGATAAATATGCTACCTACTGTATGTTTGACTAATCAGCCAAAGTATTTGCACTTTTTATGGTGGCAATGATGGCCAAAACACAGACTAAAGGAACATTTGGCTGCCTGATCTATCAACAGTGCAAAGACAAAATGGCCTCTGATTTATCTTGATCTAGAGAGACTTATGTCAAGTTATGATTAAGATTCATCTTTGCCAGTTAAGAAATCATGTTGCCTTAGATTCCACACCGTTGTTGAAAACTAAGGCAAAGTGTTTATACAGAATCCCGGAAGGAGAAGTTCGAATGTTCTGAATGTGATCATTCTGATACTGGAACACTCCATGCACGCAAACGTATATTATTAcagtacatgtttatatacagtacaaccACATCTATATGTGCTTTCTGGACAGTGACAAAGTGGTGTTTTATAGCCTGTTGTATAGATGACCACGCAAGCTATATCTGCTACTCCTCCAACCATTTTTggaataaaaaacaaataaaaaaatgacaaaaatacCAAATTAAATGTTACTAAGTGTTGCTAGATATAGAAGATTTTATGATGACGTTGATCGGCATTTACTTTTCATTTCAGTTGAATTCTTTATTCCCCCGTTAAACATTTGTTTAGTTTTTATACAAATGCCAACCTGATCTAATAGATATATTGACCCCGCCCAGTAGTAGCCTGACCGTCCTCAAACTGTACAAGTTAATGATAGTGGACAGTAGAGACCTGGCATGATGATATGCAGGATGAGGTCATGTCTCCAGGGTATCACAAACTTTCTCCCCATTCCTGCTCCTTCCCAGTTCCTGGGGCAGTAACAGTAACGGATGGCCTTCCTCCCTATACCTGCCCCCCAAACTAAACCTAGCTATGTACAAATGAAGACGTATACTACTGATGATGTTGCTGTATGTGTTCCTATAAGTGGTCCTATAACATGATTGTTTAGTGTATGCTTGGGCTGATGCAAACAAACTGAAGAAGAAATAGGAAGCGATCATTTGAACCGTTTGTGTTTTTGTCATTCTACTGTCAGCTCTGTTCTGCTGTCCTGGTGACCTGATGGACTTGGAATGAGTGCTACTATGACCTATAAATAATGAGGACTATTATAAATTCTTTGATTGTTCATTTCTTTTTAATTTCTACATGTGCTATTTTTttctacagtattttatgttCAAATTGTGACAATGTCTTTATTATTGACCTCAGTAACATTTATTAtgaaaaaaatagttttgaaaaATGAAATGAATACATGAAATAAAATGTTACCTAAGTGAACTTCAGTCTACTGTATGAGGTTCTATGGTAAAATCATTGTGCTTTGTTAATTACTAAATGGTTCATTGGTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2155730 lncRNA downstream 113608 57914847 ~ 57915050 (-) True G1884446
TU2155725 lncRNA downstream 125499 57902936 ~ 57903159 (-) True G1884441
TU2155597 lncRNA downstream 239406 57747822 ~ 57789252 (-) True G1884321
TU2156660 lncRNA upstream 75698 58448202 ~ 58453093 (-) False G1885279
TU2156661 lncRNA upstream 77216 58449720 ~ 58451707 (-) True G1885280
TU2156658 lncRNA upstream 78276 58450780 ~ 58453093 (-) True G1885279
TU2156802 lncRNA upstream 288828 58661332 ~ 58663356 (-) True G1885415
TU2156957 lncRNA upstream 474984 58847488 ~ 58847709 (-) True G1885568
XM_036960878.1 mRNA downstream 412537 57590001 ~ 57616121 (-) False LOC110503041
XM_036960876.1 mRNA downstream 595202 57389610 ~ 57433456 (-) True LOC110503011
XM_021581375.2 mRNA downstream 595208 57389610 ~ 57433450 (-) False LOC110503011
XM_036960875.1 mRNA downstream 595505 57389610 ~ 57433153 (-) False LOC110503011
XM_036960873.1 mRNA downstream 647007 57339527 ~ 57381651 (-) True LOC110503010
XM_021581398.2 mRNA upstream 974079 59346583 ~ 59351909 (-) False gpr75
XM_036960896.1 mRNA upstream 983303 59355807 ~ 59454278 (-) False LOC110503043
XM_036960897.1 mRNA upstream 983303 59355807 ~ 59454278 (-) True LOC110503043
XR_005039278.1 mRNA upstream 1091667 59464171 ~ 59466881 (-) True LOC118943927
XM_036960903.1 mRNA upstream 1494476 59866980 ~ 59933274 (-) False LOC110503014
TU2155498 other downstream 293160 57734357 ~ 57735498 (-) True G1884227
TU2155344 other downstream 437096 57590044 ~ 57591562 (-) True LOC110503041
TU2154750 other downstream 911965 57112133 ~ 57116693 (-) True LOC110503007
TU2154351 other downstream 1318770 56706114 ~ 56709888 (-) False G1883244
TU2157260 other upstream 717169 59089673 ~ 59090564 (-) True G1885863
TU2157736 other upstream 976797 59349301 ~ 59351870 (-) True gpr75
TU2158377 other upstream 1593858 59966362 ~ 59966666 (-) True G1886825
TU2158391 other upstream 1622880 59995384 ~ 59997063 (-) True G1886838
TU2159143 other upstream 2401606 60774110 ~ 60825790 (-) True G1887449

Expression Profile