RNA id: XM_036960909.1


Basic Information

Item Value
RNA id XM_036960909.1
length 1827
RNA type mRNA
GC content 0.50
exon number 3
gene id LOC110503042
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 59962215 ~ 59972534 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGATCGTATGCGACCTTCGTGAACAACGACTACAGACAAAGAGGTGCCATATACTCGCTCTCTACGCCCACGTGTCTGTTTCGATGTGTTTCACCTAGGAGCAGAGAAGAGGGGAACAGACTGACGTAACATAGTCCCGGCATCCTCCGCCGCCACATCATCCTCTTCTCAGCAGCAGAACGACCCTTCTCGGTGAAAGTGAACAGAATATACAGaggacaggcagagaggagacgGAAAAGAAACCAAAACGTATAGAGTAACGATTCTCACATGCTTGCTTTTGGTCGTAGTTGATAAGGACCTCGCGCTTGAACTAGAAATAAGCTACATGATATTTTAGCCGACGTTGTTACTATTTTGGCGTCTATAAACTATTCATTGTTTATGTTAAGAGTATAAACTGTAACACATTGAGGTTTCAACAACTCTTGGAAAATGCTACAATCTCTAACTAGCAATTCGTGTGTGCGGTTGATACAAAGTCACAAATCGACATGGTATTTTTTGCTTCTAGTCTTGGGATATATTCTTTATCTTATATTCGGAGCTGTTGTCTTTTCATCGGTGGAACTGCCTTATGAAGACCGGCTAAGACAGGAGTTACGAACCATCAAAAAACTGTTCCTCCAGGACCACGAATGTCTGTCGGAAGAACGCCTTGAGGAGTTTCTGGAGAAGGCGCTCGAGGCCAGTAACTATGGAGTGTCCATTCTCAATAACGCATCGTCAAATTGGAACTGGGACTTCACCTCCTCGCTCTTTTTCGCCAGTACTGTATTGTCTACCACAGGATACGGTCACACCGCTCCGCTCTCCGACGGGGGAAAAGCTTTTTGTATCGTCTACTCTGTGCTCGGCATCCCcttcaccctcctcttcctcactgccGTGGTCCAACGCATCATGATCTTCAGCACACGCCGGCCCGTCATGTATGTGTCCACCCGCTGGGGCCTGTCCAAACCTTTGGTAGCCATGGTCCACGCCACGCTCCTCGCCATCCTGGCTGCTTCCTGTTTCTTCCTCATCCCGGCAGCCATCTTCTCCTCCCTAGAGGAGAACTGGAACTTCCTGGAGAGTTTCTACTTCTGTTTTATATCTCTCAGTACCATCGGACTGGGAGATTACGTACCAGGAGAGTCCTTCAACCAGAGGTTCAGACAGATCTATAAAGTGGGCATCACTGtctaccTCCTCCTGGGCTTGGTCGTGATGCTTGTGGTCCTGGAGACGTTCTGTGAGCTGCAGCAGCTGAAGACCCTGAGGAAGATGTTCTATCTGAAGAAGGAGAAACCACAGGACCGCCTGGCTATACTGGAGCATGACCATCTGGCCTTCACCGCCGTGTCCCACCAGAACAACTCCACCTCGCTCAGGGAGGACAACACCAAGAACCTGCCCTTCGTTAGTGTCCCCGAGCTGGCCTCGCCCGGTGGGGACGACCCCATGATCGGCTAGAAAGGGGGTGGGGATAGTTAAAATGTTGGGGTGAAACTAGGGAAGGCCAAGGAGAGTAGAAGTGTAGTGAGGGGGGAGGGATGGTGAAACTAAGGTTGCAATCCAATTCTCTATCCTTCTTCTGAAGTGTGCACTTGATCACTGCATTTGTCactataccctgatgaagacagcttgtctgtcgaaacgttggttatTAGGATATTAAATGATTGCATCTGAGCCCCTGGGTGTGCAGCTCTCCTTTCctttttcaagtgttctactccgctagccagcacctcgcctaaacacgtGTTCTACTcggctagccagcacctcgcctaaacaggtgttctactccgctagccagcacctcgcctaaa

Function

GO: NA

KEGG:

id description
K04912 KCNK1, K2P1.1; potassium channel subfamily K member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2158164 lncRNA upstream 99753 59861436 ~ 59862462 (+) True LOC110503015
TU2158139 lncRNA upstream 138590 59823287 ~ 59823625 (+) True G1886620
TU2158134 lncRNA upstream 144525 59817424 ~ 59817690 (+) True G1886615
TU2158082 lncRNA upstream 163217 59798622 ~ 59798998 (+) True G1886570
TU2158074 lncRNA upstream 173585 59768276 ~ 59788630 (+) True G1886562
TU2158168 lncRNA downstream 3614 59976148 ~ 59976670 (+) True G1886645
TU2158216 lncRNA downstream 13801 59986335 ~ 59987088 (+) True G1886685
TU2158220 lncRNA downstream 17793 59990327 ~ 59990543 (+) True G1886689
TU2158264 lncRNA downstream 112157 60084691 ~ 60084897 (+) True G1886728
TU2158267 lncRNA downstream 117252 60089786 ~ 60090030 (+) True G1886731
XM_021581394.2 mRNA upstream 95440 59847130 ~ 59866775 (+) False LOC110503015
XM_021581395.2 mRNA upstream 99721 59847111 ~ 59862494 (+) False LOC110503015
XM_021581386.2 mRNA upstream 99721 59847120 ~ 59862494 (+) False LOC110503015
XM_036960907.1 mRNA upstream 99721 59847127 ~ 59862494 (+) False LOC110503015
XM_036960899.1 mRNA upstream 145794 59703394 ~ 59816421 (+) False LOC110503016
XM_036960910.1 mRNA downstream 40171 60012705 ~ 60174128 (+) False slc35f3b
XM_036960911.1 mRNA downstream 40171 60012705 ~ 60174129 (+) False slc35f3b
XM_036960912.1 mRNA downstream 112853 60085387 ~ 60174128 (+) False slc35f3b
XM_036959918.1 mRNA downstream 352755 60325289 ~ 60371061 (+) True col9a1b
XM_036960939.1 mRNA downstream 673532 60646066 ~ 60907352 (+) False LOC110516668
TU2158073 other upstream 174226 59783986 ~ 59787989 (+) True G1886561
TU2158068 other upstream 176120 59749718 ~ 59786095 (+) False G1886560
TU2158069 other upstream 176120 59763313 ~ 59786095 (+) False G1886560
TU2158067 other upstream 176120 59774662 ~ 59786095 (+) True G1886560
TU2158065 other upstream 225744 59727746 ~ 59736471 (+) True G1886558
TU2158232 other downstream 197814 60170348 ~ 60170780 (+) False slc35f3b
TU2159617 other downstream 1304241 61276775 ~ 61277763 (+) True G1887835
TU2160160 other downstream 1954212 61926746 ~ 61927857 (+) True G1888298
TU2160531 other downstream 2591991 62564525 ~ 62565083 (+) True G1888544

Expression Profile