RNA id: TCONS_00051995


Basic Information

Item Value
RNA id TCONS_00051995
length 901
lncRNA type lincRNA
GC content 0.49
exon number 10
gene id XLOC_026703
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 43878456 ~ 43889443 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCTGCAGGACTGCCTGACTAACACACACTCAACACTCCTGCTGCAGGGTCAGGGGTGTCAGCGTGAAAATGATACATTTTCAGCTGTCTGTGCTGCTTGCTTTGGGATTCATCACACTGATCAACGGCCAGTGTGTGGTGGACTTCCAAAATGgcACAGTTTCCAACAACGGTTCATCTTGCTCTTCATTCTCAAACTCGACACTCAACAGCACCCTCTCCTGCGCGGGCATACAGCTCTCAGACTACTCCCTGGCCAATCTCCAAAATCTCAAAGCATATACCGACGCCACCTTTGACCTTTACACATTACTGAGATCTAGACTTGACGCTAGTCTTGTCGTGAGCTACATCAATAACATCAGGACAAAAGGCTCGGTTGCGGGCTCATTGAGCGATGTGGATTTCGCTAGGCTGTGGTTTCAAGTAAAGCTCAGTCCATTCCTGTCCTCGCTGTCCAGAGACACGCTGTCCTGTCTCAGTCGAAGCAGTTTCACCTGCCAGAGCTTCCAAGCACTGGTAAATGATTTAAGCGTGCAGATTGGTCCTGAAAGACAAAGGATGGTGTATCAAAACTTCATAAAACCCTTTCTGGCAAGAAATACAACTGACGctgGCTGTGTGAACAGCACAAACAGCACCGGGCAATGGCTGCTACTCAACTTCCAGTCATTCTCTTCTATTGCAAGCCTAGGAGATTTCATAGCTCTGAAACCAGACTTTAATGGGCTGGTGGTCCTAGGTAAACTCACGCCGGAGCAGAAAGCTGAACTGATGTTTCAGCTAGAAGCCAACTTTAGCCTGAACGCTGATGCCGTCAGTCAGATCTTCCAGAGTTTCCTGCAGCCCCTCATCAACATGACACTGAACCTGACCAGCACCAGTTCAGGGCTCCTCGACA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000170230

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051994 lncRNA downstream 3327 43866785 ~ 43875129 (-) True XLOC_026702
TCONS_00052486 lncRNA downstream 191987 43661692 ~ 43686469 (-) True XLOC_026698
TCONS_00053099 lncRNA downstream 296101 43579490 ~ 43582355 (-) False XLOC_026698
TCONS_00052485 lncRNA downstream 689371 43187194 ~ 43189085 (-) True XLOC_026695
TCONS_00053098 lncRNA downstream 851721 43024821 ~ 43026735 (-) True XLOC_026694
TCONS_00053100 lncRNA upstream 222102 44111545 ~ 44124370 (-) True XLOC_026708
TCONS_00053101 lncRNA upstream 443304 44332747 ~ 44335853 (-) True XLOC_026709
TCONS_00053102 lncRNA upstream 1650343 45539786 ~ 45543451 (-) True XLOC_026716
TCONS_00052022 lncRNA upstream 1886937 45776380 ~ 45778109 (-) True XLOC_026717
TCONS_00052487 lncRNA upstream 1942634 45832077 ~ 45834382 (-) False XLOC_026719
TCONS_00051993 mRNA downstream 5567 43835558 ~ 43872889 (-) True XLOC_026701
TCONS_00051992 mRNA downstream 43401 43828545 ~ 43835055 (-) True XLOC_026700
TCONS_00051991 mRNA downstream 57075 43813819 ~ 43821381 (-) True XLOC_026696
TCONS_00051990 mRNA downstream 107580 43757181 ~ 43770876 (-) True XLOC_026699
TCONS_00051988 mRNA downstream 228267 43579490 ~ 43650189 (-) False XLOC_026698
TCONS_00051996 mRNA upstream 52589 43942032 ~ 43954971 (-) False XLOC_026704
TCONS_00051997 mRNA upstream 52845 43942288 ~ 43954973 (-) False XLOC_026704
TCONS_00051998 mRNA upstream 52845 43942288 ~ 43959873 (-) False XLOC_026704
TCONS_00051999 mRNA upstream 57908 43947351 ~ 43954343 (-) True XLOC_026704
TCONS_00052000 mRNA upstream 112857 44002300 ~ 44012748 (-) False XLOC_026705
TCONS_00051981 other downstream 1012256 42866083 ~ 42866200 (-) True XLOC_026691
TCONS_00051964 other downstream 2566313 41312022 ~ 41312143 (-) True XLOC_026680
TCONS_00051939 other downstream 3348677 40526882 ~ 40529779 (-) False XLOC_026667
TCONS_00051938 other downstream 3348678 40526879 ~ 40529778 (-) False XLOC_026667
TCONS_00051924 other downstream 3719769 40154294 ~ 40158687 (-) True XLOC_026658
TCONS_00052007 other upstream 192180 44081623 ~ 44094226 (-) False XLOC_026707
TCONS_00052055 other upstream 3305694 47195137 ~ 47195234 (-) True XLOC_026732
TCONS_00052070 other upstream 5188319 49077762 ~ 49077879 (-) True XLOC_026748
TCONS_00052082 other upstream 5925754 49815197 ~ 49815287 (-) False XLOC_026760
TCONS_00052087 other upstream 6214628 50104071 ~ 50117962 (-) True XLOC_026764

Expression Profile

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