RNA id: TCONS_00051999


Basic Information

Item Value
RNA id TCONS_00051999
length 673
RNA type mRNA
GC content 0.42
exon number 3
gene id XLOC_026704
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 43942032 ~ 43959873 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTTGGGGAATTTGCTAGATGATTCTGCGCCCTTGGACACCAGCTAGTTCAATTAGCTTTAAACGTGTACAGTATACTAGACACTAGTAATTATTGTAAACATACACCATCTCTTTTGTGaagtattaaaaacataaattcagAAAAGATCAGGAGTGTTGTCTAGTTTTCTTTCATAGGAGTTATAAAATGAAGGAAGTGAGGTAGTAGGTATGGAGGCTGAGGTCACACAGAAGGTACCAGAAGTGTTGTGCGAAGCTGCGGGACAAGGAGACGAAGCAGGCAGCGAAGCAACATCTCTTACCGATGGTGAAAGCACATCAGCTGAGCCTGCTGCGGTCAGCAACGGAGAGGAAAGTGACGAGGGGAAAGAGATGGTGGACGTGAAAATCATTtggaacaaaaacaaatatgatcTTAAAATCCCTTTAGATGGCACCGGTGCCAAGCTGAAAGAGAAGATTCACGCTCTCACTGGTCTTCCACCCGCTATGCAGAAAGTGATGTACAAAGGACTGCTACCTGAGGAAAAGACACTTCGAgaaattaaagttacaaatggtgcAAAGATCATGGTGGTCGGATCCACAATAAATGATGTACTAGCTGTAAATACACCAAAAGAAGTTATTCAGCAAGAGGTTAAAGCCGAGGAGAACAAAAAGGAGCCATT

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050506-90 Orthologous to human UBFD1 (ubiquitin family domain containing 1).

Ensembl:

ensembl_id ENSDART00000157580

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051995 lncRNA downstream 57908 43878456 ~ 43889443 (-) True XLOC_026703
TCONS_00051994 lncRNA downstream 72222 43866785 ~ 43875129 (-) True XLOC_026702
TCONS_00052486 lncRNA downstream 260882 43661692 ~ 43686469 (-) True XLOC_026698
TCONS_00053099 lncRNA downstream 364996 43579490 ~ 43582355 (-) False XLOC_026698
TCONS_00052485 lncRNA downstream 758266 43187194 ~ 43189085 (-) True XLOC_026695
TCONS_00053100 lncRNA upstream 157202 44111545 ~ 44124370 (-) True XLOC_026708
TCONS_00053101 lncRNA upstream 378404 44332747 ~ 44335853 (-) True XLOC_026709
TCONS_00053102 lncRNA upstream 1585443 45539786 ~ 45543451 (-) True XLOC_026716
TCONS_00052022 lncRNA upstream 1822037 45776380 ~ 45778109 (-) True XLOC_026717
TCONS_00052487 lncRNA upstream 1877734 45832077 ~ 45834382 (-) False XLOC_026719
TCONS_00051993 mRNA downstream 74462 43835558 ~ 43872889 (-) True XLOC_026701
TCONS_00051992 mRNA downstream 112296 43828545 ~ 43835055 (-) True XLOC_026700
TCONS_00051991 mRNA downstream 125970 43813819 ~ 43821381 (-) True XLOC_026696
TCONS_00051990 mRNA downstream 176475 43757181 ~ 43770876 (-) True XLOC_026699
TCONS_00051989 mRNA downstream 300618 43580962 ~ 43646733 (-) False XLOC_026698
TCONS_00052000 mRNA upstream 47957 44002300 ~ 44012748 (-) False XLOC_026705
TCONS_00052001 mRNA upstream 48604 44002947 ~ 44012804 (-) False XLOC_026705
TCONS_00052002 mRNA upstream 53907 44008250 ~ 44012748 (-) True XLOC_026705
TCONS_00052003 mRNA upstream 94564 44048907 ~ 44060037 (-) False XLOC_026706
TCONS_00052004 mRNA upstream 94634 44048977 ~ 44059902 (-) False XLOC_026706
TCONS_00051981 other downstream 1081151 42866083 ~ 42866200 (-) True XLOC_026691
TCONS_00051964 other downstream 2635208 41312022 ~ 41312143 (-) True XLOC_026680
TCONS_00051939 other downstream 3417572 40526882 ~ 40529779 (-) False XLOC_026667
TCONS_00051938 other downstream 3417573 40526879 ~ 40529778 (-) False XLOC_026667
TCONS_00051924 other downstream 3788664 40154294 ~ 40158687 (-) True XLOC_026658
TCONS_00052007 other upstream 127280 44081623 ~ 44094226 (-) False XLOC_026707
TCONS_00052055 other upstream 3240794 47195137 ~ 47195234 (-) True XLOC_026732
TCONS_00052070 other upstream 5123419 49077762 ~ 49077879 (-) True XLOC_026748
TCONS_00052082 other upstream 5860854 49815197 ~ 49815287 (-) False XLOC_026760
TCONS_00052087 other upstream 6149728 50104071 ~ 50117962 (-) True XLOC_026764

Expression Profile

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