RNA id: TCONS_00052000


Basic Information

Item Value
RNA id TCONS_00052000
length 1854
RNA type mRNA
GC content 0.41
exon number 10
gene id XLOC_026705
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 44002300 ~ 44012804 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACATTTTGAACTGCTCGTCTGGACTTTTTGTGTGACACAGAGAAGCAAATTAAGTTTCTTATGTTTTACTTCGCGAACGAGGAAACCTATAGGATATAGGATGTCTTCCTCATTATTTCTTTACCAGATCATCCTCACACTCGTCTGCCAAGCACTTTGTGACGATCCCATTAAGGACTTGAATTGTTTTAATGACTACGAGGCCGAGATGACGTGCAGTTTCTCTTCTGAAAGTCTCAGAAATTGTTCTGGATACAAGCTGAACGTCACACAAAAACTAGCATATGAGATAAATAGGTTTTCATGCGTCTTTGAGAGAAGTCATCACAATGCCATTTGTGAATGCAAAATTGAAGTGGAAGGCTTTATTACTGAAGAGATCTTCTCCACTACACTTCTCAAAGGAACAAAGGTTTTATTACAAAGGGATTTCAAGACGATAGATTATATCAAACCAAAAACTCCTGTGTTATTTGTGAAGAAGACAGAAAATAGAAACTTTCATGTTACCTGGGATGATAGCTATGGACAAAGGAATGTCTTTACAGATAATTTGTTTATAACTCTGACCTATAGGATCAAAGGAGAAATTGAAACAAATTCCACAAAGGAGGCAAACACTGTTGGATTCTGTGTTATCGTGGGCAGTCTTCTCCAGCCAAAAACTGAATACATTCTGACAGCAAAAATGAGCTCGAACTACAACGGTCAGAAGATATATAGTGATCAGAGTGCAGCAGTTCATTTCACCACTGCTCCATTACCTAATGAAATAGTCAAACTGGTGGTTCCACCATTGTGTATTGGTTTACTCATCATCATTTGTATGACCTTCATCTGTTTTTTGAGGATGAAGTCAAAGTGGTGGGACAAGATCGCCAAGCCAACAATTAAAGACAATTTTGGAAATAAGaagGATCAACTTTTGCCTCATTCCTCCAATGCAGTCTACCCAAACCAAGTTGAGGTTATTAATCCAGACTTCGAGGAGGGAAAGAAAtcGATCTCAAAAGTATGTGTGAACCCAAACAACGAGAGAAGTTCTCACAGTGTTGAATCATCACCAGGGGATAATGGCCAGGCCGTCTGTGATTCTGGTAGCAATCCGGTGCAAGACATCCGATCACAACTTGATATTGCAATAGCTCTAGATTTTTTACGGTTGAAATGGAACACACCACTCAACCAGTTCATTGAGATGCCATAGAACAGTGTGGAGTCTTCTTCAAAGGAAAGGAATCGTGCTAACAGAGATTCGGGTACCTGCTCGGGTTCATCGGTTTTCAGCAACAAGTCATATTTGGAAGGAACCACTGATGATTCTTCATTTTTAGACCTGAACTGTGATCATTCTGATGATAGAAAAGTCTCAGACTCCATATTTAAGCTGGAAAACTCTATTGATATCATTAAGAGCCTGCAGAACTTTCCTGATGAAGGATATCAGGCTTTCAGTGCTGTTGTGGAAAAGAGAGATGTTGTAGATGGTTGTGCGAAACTTTCCTCTGATGTTGATGCAGACGACAAGGTGATCAGGCAAAATCTAATCACCAGTGCCAATCCACTGTATTCTCCTCTGTTACATCATGATCACACAATCGCAAGGGATGATCCCTATAAAGCTTTTCAAGACGTATCAAAAAACACGGGGGGACAATGGAGCACGAGCATCAGCACTGAGCGAACACTTAATGAATGTGGAGCTCTGAAATTCCCCCACATCGCCGGCCAAACAGCCCTGTTACAGAACACTGCTTGGGACTTTTTGAATATCCCACCGACTGTTGAAATAGACCTTTCATATCACGCTGTCTAACTGTGTCGCACATAAGTAAAACATTTCAGTCTCTTTGC

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-140107-1 Is expressed in several structures, including digestive system; gill; immune system; integument; and ovary.

Ensembl:

ensembl_id ENSDART00000167248

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051995 lncRNA downstream 112857 43878456 ~ 43889443 (-) True XLOC_026703
TCONS_00051994 lncRNA downstream 127171 43866785 ~ 43875129 (-) True XLOC_026702
TCONS_00052486 lncRNA downstream 315831 43661692 ~ 43686469 (-) True XLOC_026698
TCONS_00053099 lncRNA downstream 419945 43579490 ~ 43582355 (-) False XLOC_026698
TCONS_00052485 lncRNA downstream 813215 43187194 ~ 43189085 (-) True XLOC_026695
TCONS_00053100 lncRNA upstream 98797 44111545 ~ 44124370 (-) True XLOC_026708
TCONS_00053101 lncRNA upstream 319999 44332747 ~ 44335853 (-) True XLOC_026709
TCONS_00053102 lncRNA upstream 1527038 45539786 ~ 45543451 (-) True XLOC_026716
TCONS_00052022 lncRNA upstream 1763632 45776380 ~ 45778109 (-) True XLOC_026717
TCONS_00052487 lncRNA upstream 1819329 45832077 ~ 45834382 (-) False XLOC_026719
TCONS_00051998 mRNA downstream 42427 43942288 ~ 43959873 (-) False XLOC_026704
TCONS_00051997 mRNA downstream 47327 43942288 ~ 43954973 (-) False XLOC_026704
TCONS_00051996 mRNA downstream 47329 43942032 ~ 43954971 (-) False XLOC_026704
TCONS_00051999 mRNA downstream 47957 43947351 ~ 43954343 (-) True XLOC_026704
TCONS_00051993 mRNA downstream 129411 43835558 ~ 43872889 (-) True XLOC_026701
TCONS_00052003 mRNA upstream 36159 44048907 ~ 44060037 (-) False XLOC_026706
TCONS_00052004 mRNA upstream 36229 44048977 ~ 44059902 (-) False XLOC_026706
TCONS_00052005 mRNA upstream 42559 44055307 ~ 44060037 (-) True XLOC_026706
TCONS_00052006 mRNA upstream 68872 44081620 ~ 44094248 (-) False XLOC_026707
TCONS_00052009 mRNA upstream 68902 44081650 ~ 44094451 (-) False XLOC_026707
TCONS_00051981 other downstream 1136100 42866083 ~ 42866200 (-) True XLOC_026691
TCONS_00051964 other downstream 2690157 41312022 ~ 41312143 (-) True XLOC_026680
TCONS_00051939 other downstream 3472521 40526882 ~ 40529779 (-) False XLOC_026667
TCONS_00051938 other downstream 3472522 40526879 ~ 40529778 (-) False XLOC_026667
TCONS_00051924 other downstream 3843613 40154294 ~ 40158687 (-) True XLOC_026658
TCONS_00052007 other upstream 68875 44081623 ~ 44094226 (-) False XLOC_026707
TCONS_00052055 other upstream 3182389 47195137 ~ 47195234 (-) True XLOC_026732
TCONS_00052070 other upstream 5065014 49077762 ~ 49077879 (-) True XLOC_026748
TCONS_00052082 other upstream 5802449 49815197 ~ 49815287 (-) False XLOC_026760
TCONS_00052087 other upstream 6091323 50104071 ~ 50117962 (-) True XLOC_026764

Expression Profile

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