RNA id: XR_005039280.1


Basic Information

Item Value
RNA id XR_005039280.1
length 361
RNA type mRNA
GC content 0.50
exon number 3
gene id LOC110522442
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 61606024 ~ 61614271 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgcgtgtgcttctCTCATGCAGGCTTTGGTGGGCCGTTCTGTGAGGTGAATCTGAACGACTGCAAGTCGATGCCGTGCCAGAACGGAGCTGTGTGTGTGGACGGTGTTGACCTGTATCACTGCTTCTGTCCAGCTGGGTTTCAGGGGCTGAACTGTGAAATCAACTATGATGAATGTGTTTATGGATTCTGCGCCAACAATTCCACATGTGTTGACCTGGTTGCCGACTATGGATGCATCTGCCCAGTGGGGTTTGTTGGTAAAAACTGCTCTACACCTGTTATTGAATGTGCGTCAGGAGATAGGACAAAATGCAAAAATGGCGGCACCTGTTATACCTTTGCCGGAGTGGTTCACTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2159964 lncRNA upstream 15034 61589736 ~ 61590990 (+) True G1888129
TU2159962 lncRNA upstream 17660 61587587 ~ 61588364 (+) True G1888128
TU2159921 lncRNA upstream 44860 61559527 ~ 61561164 (+) True G1888096
TU2159903 lncRNA upstream 60390 61544531 ~ 61545634 (+) True G1888083
TU2159899 lncRNA upstream 64597 61541210 ~ 61541427 (+) True LOC118943929
TU2160004 lncRNA downstream 34783 61649054 ~ 61649486 (+) True G1888161
TU2160014 lncRNA downstream 58705 61672976 ~ 61673579 (+) True G1888170
TU2160093 lncRNA downstream 187731 61802002 ~ 61802900 (+) True G1888238
TU2160106 lncRNA downstream 220339 61834610 ~ 61835067 (+) True G1888251
TU2160113 lncRNA downstream 237108 61851379 ~ 61852170 (+) True G1888257
XM_036960957.1 mRNA upstream 30350 61558011 ~ 61575674 (+) True LOC110532895
XR_005039279.1 mRNA upstream 50854 61541152 ~ 61555170 (+) False LOC118943929
XM_036960955.1 mRNA upstream 83975 61493657 ~ 61522049 (+) True LOC118943928
XM_036960956.1 mRNA upstream 87807 61493657 ~ 61518217 (+) False LOC118943928
XM_036960940.1 mRNA upstream 698672 60646066 ~ 60907352 (+) False LOC110516668
XM_036959919.1 mRNA downstream 1711 61615982 ~ 61620197 (+) True LOC118943838
XM_036959920.1 mRNA downstream 129478 61743749 ~ 61815674 (+) True LOC118943839
XM_036960954.1 mRNA downstream 209194 61823465 ~ 61990656 (+) True LOC110516873
XR_005039282.1 mRNA downstream 423384 62037655 ~ 62038684 (+) False LOC118943931
XR_005039283.1 mRNA downstream 423384 62037655 ~ 62038684 (+) False LOC118943931
TU2159617 other upstream 328261 61276775 ~ 61277763 (+) True G1887835
TU2158232 other upstream 1435244 60170348 ~ 60170780 (+) False slc35f3b
TU2158073 other upstream 1818035 59783986 ~ 59787989 (+) True G1886561
TU2158069 other upstream 1819929 59763313 ~ 59786095 (+) False G1886560
TU2160160 other downstream 312475 61926746 ~ 61927857 (+) True G1888298
TU2160531 other downstream 950254 62564525 ~ 62565083 (+) True G1888544

Expression Profile