RNA id: XM_036960954.1


Basic Information

Item Value
RNA id XM_036960954.1
length 3490
RNA type mRNA
GC content 0.53
exon number 14
gene id LOC110516873
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 61823465 ~ 61990656 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CcatgcagccaccaccaccaccagtctgCCATGCTGCCCTCTGTCTTAACGGTGGGACCTGCCATGAGCTGCAGAGGCCCAGTGGAGCTTTGTCCTTCTACTGCGACTGCCCCCTACACTTCACTGGACGTTTCTGTGAGAAAGATACCACAATATTCATCCCCTCGTTCAACGGCACATCGTACTTGGAGCTGCCTCCCCTTGTCTCTCTGCTGCAGTCTCCTGGTGCCAGCGCAGATCCCTCTCACCCTGCCAAAGACACCACTGTTACCCTGTATCTGACTGTCAAAACCAGAGCTACACAGGGCACCATCCTCTACACTCGGGAAGAGAATTTAGGTGATCGGTTTCTCCACGTGTTGCTCCAGGATGGGATCCCTGTGGTAAAACTGGGATGTAGTGGTGTCCAGGTGTTGAATGCAGACGCAGGCCAAACCATCAACACTAACAGGCAGACATCCATCAGAATACGataTGGGCTGCCTGTCGGTAGGAGTGGAGGGTCATGTATGATTGAAATAGCAGTAGATAATGGAACAGTGAAACGTCAGGAGGAATCCTTGTTCCAGCCTGTGTCAGAGGTAGCGTTGGGGCCTATATTCCTGGGGGACGTCCCCTCCCATAGGGATCAGCCTGCCAGCACCAGGGAGGTGACGGGTTTTGTAGGCTGTATCAGGGAGCTGCAGGTCAACAATAAGGACATCTACATAGCAGGAGAGGCACTGGGAGGGAGGAACATCCACAACTGTGACACACCTGTCTGTCAGCACCTGCCCTGCCGCAATGGAGGCACCTGTGTCAGTGATGCAGAGGACTGGTTCTGTGAGTGCCCTCCTCTCTACTCTGGTCGGCTCTGCCAGTTCACAGCCTGTGAGTGGAGCCCCTGTGGTCACGGAGCCACCTGTATCCCCAAGTCCCACCAGGaagctgtgtgtctctgcccTTACGGAAGACAGGGCCTGCTGTGTGATGATGCCATCAACATCACCCGGGCCAGGTTCAGTGGGAATGATGAGTTTGGGTACACCTCGTTCATAGCGTACTCCTCCATCCCCAGTCTCAGTGTCTACTACGAGTTCCAACTGAAACTAACGTTCGCCGACAGAGCCTCAGCTCTGAAGGACAACCTCATCCTCTTCTCTGGACAGAAAGGACAGGGCATTGATGGAGATGACTTCCTAGTTCTGGGGGTTCGGAATGGCAGAATTGTTCACAAGTTCAACCTTGGATCTGGTGTGGGAACCATGGTCAGCGACCGGCTGAACCGTGAGATCGATATCCACACTGTGAACTTTGGCAGATCTAAGAGAACAGGATGGTTAAAGGTGGACGGACAGAGAAACAGGACAGGCTCTTCTCCAGGCCACCTGGCAGGTCTCAACGCGCAAAGCCAAGTCTTTGTAGGAGGATATAATGAATATACTCCTGAACTACTGCCCCTCGGATCCAGGTTTCGCAATGGCTTTCAAGGTTGCATATTTGATCTGGAGTTTCGGACGAGGAGAGACGGGAAGTTCATAGCGTTGGGGAAGCCTGAGGGTCGTCCGAACTCTGGCCGTAGCGTGGGTCAGTGCGGGGTCACACCCTGCACCCTGGTGACATGCAGAAACGGAGGAACCTGCGTGGACTCTGGATCCTCTGTCTAcTGCCAGTGCCCATTCGGCTGGAAGGGAGCACTCTGCTCTGAGACCGTGTCTGTGTGCGACGCTGAACACCGTCCCCCTCCCTTGTGTGCCCGTGGTTCCACCTGCGTACCCCTTCCAGACGGATACACCTGCCTCTGCCCCTTGGGCACCGGCGGACTGCACTGTCAGCAAGCCATGGCCATCAGTGACCCGTTCTTCAGCGGTAACCAGTCATCCTGGATGTCTTTCCCTCCAGTCAGCATCAGACACAGGACAGACCTCAGGCTGCAGTTCCAGACTCTGTCACCAGAGGGCATCGTCTTCTACACAGCACAGCACCTCAGTGCCCGGGCCGGAGACTTCTTCTGTGTGTCCCTGACATCGGGGTTGGTCCAGCTGCGTTACAACCTGGGTTCTGGAACCAACGTGTTACAGTCCACTAACAGAGTGGACACCAGCGGAGGGACCTGGCACACGGTGAGGGCAGGCAGGACAGGCCACCAGGGGTACCTGGTTCTGGACGGGCTGGAGGTGAAGCAGAACAACACAGAGGGAGGGATGTCCACTCTGGACGTGGCCACGGACCTCTTCGTCGGCGGGGTCTCTGACTTGAGCTCCATCTCTACGTTTTCCGTGGAGAACGAGCCTGTGGGTTTTACCGGAGGCGTGAGAGAGCTGGTCTTAAACGGACACGACTTTGACCTGACGGCGACAGGGGCCCTGGGAGGGGCCAATGTGGGCGACTGGGATGGGACTGCGTGCGGGTACAAGGTGTGCCAGAACGGCGGCCGCTGTACTGCGTTGAGCGGCGCCGATTCGGACTCGTTTATGTGCACCTGCCCTCCTCGGTGGACGGGTCCTGTGTGTAACCAGTCGGTGTATTGTGTCAATAACCTGTGTCAACATGAGTCATTGTGTTTCTCTGATCTTGTGACTGGCTCATACGACTGTTTCTGTCCTCTCGGGTGGGAGGGGAGGTACTGCGATAAGCAGGTCGGCCTATCCATGACCACTCTGAAGTTCGTTGGGAAATCATATCTGAAATACAGGGATCCTAAATTCAACACACGGAATCTGAGGTACACGCAGGTTTCGTTTAACTTTACAGCCAGCGGGAACGAAGGGTTGATTCTGTGGATGGGAAGAGCGGAGCACGATGATGACGATTACCTTGCTGTCGGGCTTCAGGCGGGCCACCTCAAAATCGCAGTCAACCTCGGAGAGAGGCTCTCCCTCCCGCTCACTTTCAGAAACGTCACGTTGTGTTGCAACAAATGGCATTATTTATCGATCTCTCTGAACAGTACCCTTATTCAGGTGTTCCTGGGTGACGAGAGGGTCCTTTTCGAAGACGTGGACCCCTTCGAGCGTTACGTTGCCATGAATTACGGGGGTCTGTTGTACTTGGGAGGGTTCGAGTTGCACAGGAACATCTCAACAGTGACGTCTGGGCTGTTTACCAAAGGATTTGTGGGAGATCTTAAAGACGTGCGTTTGTATCAGGACCCCAGACAACTGCACTTCCTCCAAAACAGCGAAGGATTTAATGTTCACAAAAGTAATGAGTAGTTCTGTAACTTGTGAAAATAGGTGATTAATGTGTTGTGATAAAGAAATTCATAGAATTGGTTTCTAGAATGTAATAATTTAAGTTCTTTATACACTATTTGTATGGCAATCCAAGTTGTATTCATTatgcaccaaatggaagaaaacacaAACAGGGAGGACAACTTCCTGGAAGTGTTAATAAGCGTTtgtgttgttttttaaaatccattGTGTGCCCTGATGAACACAACTCTGATGGTTTATACCCTGTgtattcctaatattgagttgctcccctccctttcaccctcaga

Function

GO: NA

KEGG:

id description
K19601 EYS; protein eyes shut

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2160093 lncRNA upstream 20565 61802002 ~ 61802900 (+) True G1888238
TU2160014 lncRNA upstream 149886 61672976 ~ 61673579 (+) True G1888170
TU2160004 lncRNA upstream 173979 61649054 ~ 61649486 (+) True G1888161
TU2159964 lncRNA upstream 232475 61589736 ~ 61590990 (+) True G1888129
TU2159962 lncRNA upstream 235101 61587587 ~ 61588364 (+) True G1888128
TU2160206 lncRNA downstream 18213 62008869 ~ 62010790 (+) True G1888335
TU2160207 lncRNA downstream 20448 62011104 ~ 62012392 (+) True G1888336
TU2160221 lncRNA downstream 23304 62013960 ~ 62014508 (+) True G1888347
TU2160220 lncRNA downstream 24943 62015599 ~ 62016029 (+) True G1888346
TU2160228 lncRNA downstream 25659 62016315 ~ 62016516 (+) True G1888354
XM_036959920.1 mRNA upstream 7791 61743749 ~ 61815674 (+) True LOC118943839
XM_036959919.1 mRNA upstream 203268 61615982 ~ 61620197 (+) True LOC118943838
XR_005039280.1 mRNA upstream 209194 61606024 ~ 61614271 (+) True LOC110522442
XM_036960957.1 mRNA upstream 247791 61558011 ~ 61575674 (+) True LOC110532895
XR_005039279.1 mRNA upstream 268295 61541152 ~ 61555170 (+) False LOC118943929
XR_005039282.1 mRNA downstream 46999 62037655 ~ 62038684 (+) False LOC118943931
XR_005039283.1 mRNA downstream 46999 62037655 ~ 62038684 (+) False LOC118943931
XM_036960966.1 mRNA downstream 87357 62078013 ~ 62114232 (+) False LOC110531647
XM_036960976.1 mRNA downstream 87361 62078017 ~ 62103617 (+) False LOC110531647
XM_036960974.1 mRNA downstream 87361 62078017 ~ 62104743 (+) False LOC110531647
TU2159617 other upstream 545702 61276775 ~ 61277763 (+) True G1887835
TU2158232 other upstream 1652685 60170348 ~ 60170780 (+) False slc35f3b
TU2158073 other upstream 2035476 59783986 ~ 59787989 (+) True G1886561
TU2158069 other upstream 2037370 59763313 ~ 59786095 (+) False G1886560
TU2160531 other downstream 573869 62564525 ~ 62565083 (+) True G1888544

Expression Profile