RNA id: XR_005039284.1


Basic Information

Item Value
RNA id XR_005039284.1
length 1433
RNA type mRNA
GC content 0.49
exon number 2
gene id LOC118943932
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 62034977 ~ 62038662 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAAAAtaagagacaaagcaagaagatcattctatgccattaaaataAACATTAATATTCACCAGTTTGGGCTGGCTAGTGGCATCAgtgctatttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttggcgaATGGTAGGGGGCCAGCTGAACAGCAGTGGGGGTCCAGATCTTTCAGAGCGCAGGGCCTCAATGGACAGAGAGGAaaaaggagtgtgtgtgagaacaggGAGAGGGGTCTCTGCCATTGTCTGCTGGTCTCTGGTTGCCAGGTCCTGCCAGGTCCTCTCCACCACAGCTCTGAAGCTGCTTTGTGTCTCTGCTGGTCTCTGGTTGCCAGGTCCTGCCAGGTCCTCTCCACCACAGCTCTGAAGCTGCTTTGTGTCTCTGCTGGTCTCTGGTTGCCAGGTCCTGCCAGGTCCTCTTCACCACAGCTCTAAAGCTGCTTTGTGTCTCTGCTGGTCTCTGGTTGCCAGGTCCTGCCAGGTCCTCTCCACCACAGCTCTGAAGTTGCTTTGTGTCTCTGCTGGTCTCTGGTTGCCAGGTCCTGCCAGGTCCTCTCCACCACAGCTCTGAAgctgctgtgtgtctctgctgGTCTCTGGTTGCCAGGTCCTGCCAGGTCCTCTTCACCACAGCTCTGAAgctgctgtgtgtctctgctgGTCTCTGGTTGCCAGGTCCTGCCAGATCCTCTCCACCACAGCTCTGAAGCTGCTTTGTGTCTCTGCTGGTCTCTGGTTGCCAGGTCCTGCCAGGTCCTCTCCACCACAGCTCTGAAgctgctgtgtgtctctgctgGTCTCTGGTTGCCAGGTCCTGCCAGGTCCTCTCCACCACAGCTCTGAAgctgctgtgtgtctctgctgGTCTCTGGTTGCCAGGTCCTGCCAGGTCCTCTCCACCACAGCTCTGAAGCTGCTTTGTGTCTCTGCTGGTCTCTGGTCCCATAAAAAAACAGTCAGTTCTTACTAAAATCTtcattttaaaactttttttttttttatcagaaacTAAATATTAATCTGAAAAGGGCATTCATCAGCACAGGAACTAAATACATCTCTGAAACAGGCATTCATCAGCACAGGAACTAAAGACACATTTCTGAAACAGGCATTCATCAGCACAGGAACTAAATACACATATCTGAAACAGGCATTCATCAGCACAGGAACTAAAGACACATCTCTGAAACAGACATTGATCAGCACAGGAACTAAAGACACATATCTGAAACAGGCATTCATCAGCACAGGAACTAAATACATTTCTGAAACAGGCATTCATCAGCACAGGAACTAAAGACACATCTCTGAAACAGGCATTCATCAGCACAGGAACTAAAGACACATTTCTGAAACAGACATTGATCAGCACAGGAACTAAAGACACATCTCTGAAACAGGCATTCATCAGCACAGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2160821 lncRNA downstream 6743 62027820 ~ 62028234 (-) True G1888801
TU2160819 lncRNA downstream 18538 62016231 ~ 62016439 (-) True G1888799
TU2160813 lncRNA downstream 46130 61988301 ~ 61988847 (-) True G1888793
TU2160810 lncRNA downstream 55690 61979011 ~ 61979287 (-) True G1888790
TU2160808 lncRNA downstream 56958 61977785 ~ 61978019 (-) True G1888788
TU2160826 lncRNA upstream 735 62037212 ~ 62038662 (-) True LOC118943932
TU2160828 lncRNA upstream 13185 62049662 ~ 62049989 (-) True G1888804
TU2160831 lncRNA upstream 18170 62054647 ~ 62054943 (-) True G1888807
TU2160784 lncRNA upstream 19857 62056334 ~ 62056729 (-) True G1888765
TU2160782 lncRNA upstream 20919 62057396 ~ 62059150 (-) True G1888763
XM_036960959.1 mRNA downstream 24325 61991088 ~ 62010652 (-) False LOC118943930
XM_036960960.1 mRNA downstream 24325 61991088 ~ 62010652 (-) False LOC118943930
XM_036960961.1 mRNA downstream 24325 61991088 ~ 62010652 (-) True LOC118943930
XM_036960953.1 mRNA downstream 635688 61395693 ~ 61399289 (-) True LOC110512348
XM_036960944.1 mRNA downstream 760362 60940417 ~ 61274615 (-) False adgrb3
XM_036960979.1 mRNA upstream 83453 62119930 ~ 62146063 (-) False LOC118943934
XM_036960981.1 mRNA upstream 83453 62119930 ~ 62146063 (-) False LOC118943934
XM_036960983.1 mRNA upstream 83453 62119930 ~ 62146063 (-) False LOC118943934
XM_036960984.1 mRNA upstream 83453 62119930 ~ 62146063 (-) False LOC118943934
XM_036960985.1 mRNA upstream 83453 62119930 ~ 62146063 (-) False LOC118943934
TU2159535 other downstream 883807 61150056 ~ 61151170 (-) False G1887761
TU2159536 other downstream 883807 61150056 ~ 61151170 (-) False G1887761
TU2159537 other downstream 883807 61150056 ~ 61151170 (-) False G1887761
TU2159538 other downstream 883807 61150526 ~ 61151170 (-) True G1887761
TU2159143 other downstream 1209187 60774110 ~ 60825790 (-) True G1887449
TU2160862 other upstream 118751 62155228 ~ 62162389 (-) False LOC118943840
TU2160863 other upstream 118751 62155228 ~ 62162389 (-) True LOC118943840
TU2160887 other upstream 224360 62260837 ~ 62267505 (-) True G1888836
TU2160891 other upstream 233145 62269622 ~ 62273827 (-) False LOC110532867
TU2160893 other upstream 233264 62269741 ~ 62273827 (-) True LOC110532867

Expression Profile