RNA id: XM_036960966.1


Basic Information

Item Value
RNA id XM_036960966.1
length 2333
RNA type mRNA
GC content 0.44
exon number 18
gene id LOC110531647
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 62078013 ~ 62114232 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAGCGTTATCGTCGTCTGATGGGAGAGGACGCGTGTTTCTGAGGACTTTTTATTGTCGATAGTAACAAAAAAACGTCTGAACATTGCGCGTGCATCGAATTACCTATTGTCTCTTTCAGGAATAATGGAGTCTGGACCAGACAGTCTGTTTGTGACTCTCCTGCTTCTCCTCCACAGTTCACACTCTGAGTCTGAGAGGTTTGAGGTTCTTGGTCCAACCGATACCATTCTTGCTGTGGCTGGTGATGACATCATTCTGCCCTGCTACCTCAAACCCAACATCAGCGCTGAGGACATGACAGTGGACTGGCTGAACCTGGACTTCAAAGATGGTCGTGTCTATCGTTACCAAAACAGAAAAATCATACGAGAGGATCAGATTCCCTCCTACATTGGAAGAACGTCACTGTTTGAAGAGGAACTATGGAGGGGCAACACCTCTTTAAAACTGTCCAGGGTACAAGGCACTGATGAGGGACATTACAAATGCTTTATTAAGGCAAAGAGCTGGGATCATGATCTCATTATTCAAGTCCTCGTTAAAGctGTAGGATCCAAGCCAGTGGTGTCCATcgagggacacagagagggagggatgggtctGCTGTGTGAATCAGAAGGCTGGCACCCTGAGCCTGAGCTGGTGTGGCTGAACAGTAAAGGAGTCCATCTCTTTGCTGGTCCTCCTGAGATACATAGAGACTTCAAGGGATTCTACACAGTCAAACAACATGTCATTGTCCAGGAGACTGACACCAACCGCTTTACCTGCAGAGTCCAACAGAGCCAGATCAATGAGAAGATGGAGACAGAGGTTCACCTCCCTAGTGAGTTATTTGATACAACCCCATTGAGAATGGCCTTCATTGTGTTATGCTGTCTGGGAGCCATCATTGGGATTGGGTTATCTCTGGCTATCTGCTGGATATCTTATAAGAAAGATGACCTCACTAGGAAGCTAGATGACCTCACTAGGAAGCTAGATGAACTCAAGGCAGAAAAGGAGGTCCTCAGGATGGAGAATGAGGACTTCAAGAAGAAGTTTAACTTCGAGAACCTCTGGAACCAGAATAATGACATCACTAAGAAGCTAGAGGAACTCATTAGGAAGTTAGATGACAACAAGAAGGGGAGCAATGACAACAAGAAGGGGAGCAATGTGGTTGAGGAGGATCTCATTCGTAATCTGGAGGGGCCTCGGGAAGGAGAGGGAGGATGTGACTCTAGACCAGGGATACTCAAGTCCTATTTGAGACGGACCGGTGACACACATTTCCTAGGTGACAAAGGATCAGATGGATAATCAGCGTAGTATCAACCCCCCAACTCACAACCCCAcgcaaactgttcacacccctcttgttggcgaCGAGaacatgttgcagttttaaagctgatttcctgcaattctacacattttgcatggGGGCAGAGATTTATTTAGCTGTTTTATAGCTGATTTCCTGCAATTCTCCACATTCCTCCATGTCTTATGTGTGTTTATATGATACCAGGCGTCAAAGCCCGACCTATTAAAAAACTAAAGAGCACATTCTGCTCCTTCACTGAGAAACGCTCCATTCTTCATCCCTGGTATTATTGatagtatctgtatctgtatctgtccaTCTGTCCTGTAGATGTCATTGACTGACTGTTTTAAAACAAACCAGGCTGGTATAAACAGTTAGCAATAGGAGAgagtttatttaacctttatttaactaggcaagtcagttaagaacaaattcttattttcaatgaaggcctaggaacagtgggttaactgtattgttcaagggcagaacgacagatttttacagctcagggattcagctcagggattcagctcagggattcaatcttgcaaccttctggttactagtccaacgctctaaccactaggctacctgcctctaaccactaggctacctgtacatGAGTTCTCAGATTTCCTATCAATCTTTTTTGTTGTAGTAGAGTGGGCCAGTTGATTGTTTATTGGATTGGACAGAGAGGTAAAGGTAGGAATGTTGAAAGATAAATTGGATGGTTCTGAACGCCTGCTGGTACTGGAACATCCCAGACCACTGATTTCTTGTTAATGTTTGACGAATCTTTGACGTGTCTTTCACCCGTCCCTTGGACTGTTCTGTCTTGAGGAGAATGTGCTACATATTTTTATTCTCTGTGTTTTCTAACAGTATTTGTTATGTATCCATTCTGCTGTATGCTTCAATATTTAGGTAAGAATTTAGCAGCAACACAAAATACACGTGTATGAATGTATCATTTGATTATAACATtttccaaataaagtgtgattaAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2160251 lncRNA upstream 20257 62057407 ~ 62057756 (+) True G1888366
TU2160249 lncRNA upstream 23964 62053358 ~ 62054049 (+) True G1888364
TU2160248 lncRNA upstream 24843 62048487 ~ 62053170 (+) True G1888363
TU2160238 lncRNA upstream 39323 62036002 ~ 62038690 (+) False LOC118943931
TU2160237 lncRNA upstream 39323 62037202 ~ 62038690 (+) False LOC118943931
TU2160258 lncRNA downstream 8525 62122757 ~ 62178580 (+) True G1888373
TU2160261 lncRNA downstream 13555 62127787 ~ 62129848 (+) True G1888374
TU2160226 lncRNA downstream 16681 62130913 ~ 62131886 (+) True G1888352
TU2160263 lncRNA downstream 18000 62132232 ~ 62132715 (+) True G1888376
TU2160266 lncRNA downstream 19211 62133443 ~ 62198313 (+) False G1888377
XR_005039282.1 mRNA upstream 39329 62037655 ~ 62038684 (+) False LOC118943931
XR_005039283.1 mRNA upstream 39329 62037655 ~ 62038684 (+) False LOC118943931
XM_036960954.1 mRNA upstream 87357 61823465 ~ 61990656 (+) True LOC110516873
XM_036959920.1 mRNA upstream 262339 61743749 ~ 61815674 (+) True LOC118943839
XM_036959919.1 mRNA upstream 457816 61615982 ~ 61620197 (+) True LOC118943838
XM_036961008.1 mRNA downstream 177507 62291739 ~ 62339471 (+) True LOC110516194
XM_036961003.1 mRNA downstream 229169 62343401 ~ 62414422 (+) False LOC118936589
XM_036961007.1 mRNA downstream 229682 62343914 ~ 62414422 (+) False LOC118936589
XM_036961006.1 mRNA downstream 229685 62343917 ~ 62414422 (+) False LOC118936589
XM_036961004.1 mRNA downstream 229822 62344054 ~ 62414422 (+) False LOC118936589
TU2160160 other upstream 150156 61926746 ~ 61927857 (+) True G1888298
TU2159617 other upstream 800250 61276775 ~ 61277763 (+) True G1887835
TU2158232 other upstream 1907233 60170348 ~ 60170780 (+) False slc35f3b
TU2158073 other upstream 2290024 59783986 ~ 59787989 (+) True G1886561
TU2158067 other upstream 2291918 59774662 ~ 59786095 (+) True G1886560
TU2160531 other downstream 450293 62564525 ~ 62565083 (+) True G1888544

Expression Profile