RNA id: XM_036960984.1


Basic Information

Item Value
RNA id XM_036960984.1
length 2358
RNA type mRNA
GC content 0.45
exon number 13
gene id LOC118943934
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 62119930 ~ 62147728 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGCTGCAGTGTCTGGCTAAGGAACAGTGAGCCACTACTGAGCCAATAAAACTCAGTTCACTTATGTATTATTCTACAGCTGGCCTCATCCCTTTGGATGAAGCTGGGCTTTTGTTCCTTTTTTGTAAAGTTTCGTAAGTTTTGTTCAATAAATCCTTAGACATCTAAAAATATAAATAAGTGAGTTACAGCGTGCTGTAGCCTACTTTCAGTTTCGCACTTCACCAAAGTAAGAATACTTTCATTTTCACTCCACACCCTTTTCTTTTCCAACGGGCTGTAAAAGACGACCTATTGTCTCTTTCAGGAATAATGGAGACTGGACCAGACAGTCTGTTTTTGACTCTCCTGCTTCTCCTCCACAGTTCACACTCTGTATCTGAGAGGTTTGAGGTTCTTGGTCCATCTGATTCCATTGTTGCTGTGGCTGGTGATGACATCATTCTGCCCTGTTACCTCAAACCCAACATCAGCGCTGAGGACATGACAGTGGACTGGCTGAACCTGGACTTCTTAGACGGTCGTGTCTTTCGTTACCAAAACCACAGAATCATACGAGAGGATCAGATTCTCTTCTATAGTGGAAGAACTTCACTGTATGAAGAGGAACTATGGAGGGGCAACACCTCTTTGAAACTGACCAGGGTACAAGGCACTGATGAGGGACGTTACAAATGCTTAATTCAGTCAAAGAGCTGGTATGATGATTTCACTGTTCAAGTCCTCGTTAAAGctGTAGGATCCAAGCCAGTGGTGTCCATtgagggacacagagagggagggatgggtctGCTGTGTGAAACAGAAGGATGGCACCCTGAGCCTGAGCTGGTGTGGCTGGACAGTAAAGGAGTCCATCTCTCTGCTGGTCCTCCTGAGATAGATAAAGACTCCAAGGGATTCTACACAGTCAAACAACATGTCATTGTCCAGGAGACTGACACCAACCGCTTTACCTGCAGAGTCCAACAGAGCCAGATCAATgagaagatggagacagagattcACCTCCCTAttgtAGGATCCAAGCCAGTGGTGTCCATTGAGGGAcacagagggggagggatgggcctGCTGTGTGAAACAGAAGGCTGGCACCCTGAGCCTGAGCTGGTGTGGCTGGACAGTAAAGGAGTCAATCTTTCTGCTGGTCCTCCTGAGATAGATAAAGACTCCAAGGGATTCTACACAGTCAAACAACATGTCATTGTCCAGGAGACTGACACCAACCGCTTTACCTGCAGAGTCCAACAGAGCAGGATCAATGagaagatggagatggagattcACCTCCCTAGTGAGTTATTTGATACAACCCCATGGAGAATATCCTTCATTGTGTTATGCTGTCTGGGAGCCATCACTGTGATTGGGTTATCTCTGGCTATCTACTGCATACGTAATAAAAAAGATGACCTCACTAGGAAGCTAGTTAACCTCGGGGACCAGAATTATGAACTCTGGGAGCACAAATATTACCTCACTGAGAATCGAGAAATCCTGACTTCTCAGCTGGATTTTGAAACCATCAGAAGACATGCAGTGGATGTGACTCTAGACCCTGATACTGCACATTGTAAACTTATCCTGTCTGATGACGGGAAACAAGTGAGACATGGAGAACTAGATCAGGTTCTCTCTGACAACGGGAAGAGGTTTACAAATTGGTCCTGTGTCCTGGGAAATGTGGGCTTCTCAGGGAAGTTCTACTATGAGGTGAAGGTGGAGGGGAAGACTGAGTGGACTTTGGGGGTGGTCATACAGTCCATCAATAGGAATGAGAGTTTTATACCAATGCCTAATAATGGATACTGGActgtggagctgaaggatggagaGTGCACAGCTAATGCAGATTCCCCTGTCACCTTcaccccgagagaggggcccctGAAAGTGGGGGTGTTTGTGGATTATGAGAAGGGTCAGGTCTCCTTCTACAATGTGGAGGACAGGTCTCATATCTACTCTTTCACTGGCTGCTCCTTCACTGAGAAACTCCATCCATTCTTCAACCCTGGTGGTTCAGATAGTATTCCACTGGTCGTCTGTCCTGTGGatgccactgactgactgttttaAATCAAACAAGGTGCAATTGTTATTTGTGAAATGCTTGTTACTCTACTAATGTGcagtaaatatactgtatataatttttaaaaaagtgctgaacaagtagttatattgacaacgtctgtcctagctcgctcatttatgtcttaatcgaaattatttATTGTCTCTTATCCGCTCCtcattcccttatgccatagtttgtacatctcaattgtcagtagaaaccacatttgtttaaacaagtcAGCAATATTTTTTAagaaggcagtaaatgaggct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2160830 lncRNA downstream 5709 62110846 ~ 62114221 (-) True G1888806
TU2160836 lncRNA downstream 36550 62080685 ~ 62083380 (-) True G1888812
TU2160785 lncRNA downstream 50419 62060287 ~ 62069511 (-) True G1888766
TU2160782 lncRNA downstream 60780 62057396 ~ 62059150 (-) True G1888763
TU2160784 lncRNA downstream 63201 62056334 ~ 62056729 (-) True G1888765
TU2160860 lncRNA upstream 6073 62152136 ~ 62154555 (-) False LOC118943840
TU2160865 lncRNA upstream 19329 62165392 ~ 62166459 (-) True G1888831
TU2160866 lncRNA upstream 22708 62168771 ~ 62222170 (-) False G1888832
TU2160777 lncRNA upstream 53527 62199590 ~ 62241532 (-) False G1888761
TU2160779 lncRNA upstream 53527 62199590 ~ 62241532 (-) True G1888761
XM_036960963.1 mRNA downstream 57647 62019428 ~ 62062283 (-) True slc1a4
XM_036960964.1 mRNA downstream 57705 62019428 ~ 62062225 (-) False slc1a4
XM_036960962.1 mRNA downstream 72329 62019428 ~ 62047601 (-) False slc1a4
XR_005039284.1 mRNA downstream 83453 62034977 ~ 62036477 (-) False LOC118943932
XM_036960960.1 mRNA downstream 109278 61991088 ~ 62010652 (-) False LOC118943930
LOC118943840 mRNA upstream 7842 62153905 ~ 62164324 (-) False LOC118943840
XM_036960990.1 mRNA upstream 21514 62167577 ~ 62202550 (-) False LOC118943935
XM_036960989.1 mRNA upstream 21514 62167577 ~ 62202628 (-) True LOC118943935
XM_036960991.1 mRNA upstream 61198 62207261 ~ 62209682 (-) False LOC118943936
XM_036960992.1 mRNA upstream 61198 62207261 ~ 62209682 (-) True LOC118943936
TU2159535 other downstream 968760 61150056 ~ 61151170 (-) False G1887761
TU2159536 other downstream 968760 61150056 ~ 61151170 (-) False G1887761
TU2159537 other downstream 968760 61150056 ~ 61151170 (-) False G1887761
TU2159538 other downstream 968760 61150526 ~ 61151170 (-) True G1887761
TU2159143 other downstream 1294140 60774110 ~ 60825790 (-) True G1887449
TU2160862 other upstream 9165 62155228 ~ 62162389 (-) False LOC118943840
TU2160863 other upstream 9165 62155228 ~ 62162389 (-) True LOC118943840
TU2160887 other upstream 114774 62260837 ~ 62267505 (-) True G1888836
TU2160891 other upstream 123559 62269622 ~ 62273827 (-) False LOC110532867
TU2160893 other upstream 123678 62269741 ~ 62273827 (-) True LOC110532867

Expression Profile