RNA id: XM_036960989.1


Basic Information

Item Value
RNA id XM_036960989.1
length 2231
RNA type mRNA
GC content 0.44
exon number 13
gene id LOC118943935
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 62167577 ~ 62202628 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGCAGCGATGCAGTTGAACAGGTTATTGTTCCAAGGAATAGAAAGAAGAAGGAGGTAGTTTGATCACATCACAATAGTTTGATCACAGAACACTAGTACATTTATCAGACTGCAGTGCCTCAATAGGACTGATTCAACCAGGAATGAAGGTGACTCAACTAGACTGTCTGTGTCTGATTCTTCTACATCTCCTACACACATCAGGCtctgAGAGGTTTGAGGTTCTTGGTCCAACTGATTCCATTGTTGCTGTAGCTGGTGATGACATCATTCTGCCCTGTTACCTCAaacccaacatcagtgctgaGGACATGACAGTGGACTGGCTGAACCTGGACTTCTTAGACGAACGTGTCTTTCGTTACCAAAACCACAGAATCATACGAGATGATCAGATTCCCTACTATAGAGGAAGAACTTCACTGTTTGAAGAGGAACTATGGAGGGGCAACACCTCTTTGAAACTGACCAGGGTACAAGGCACTGATGAGGGACATTACAAATGCTTAATTCAGTCAAAGAGCTGGTATGATGATTTCACTGTTCAAGTCCTCGTTAAAGCTGTAGGATCCAAGCCAGTGGTGTCCATtgagggacacagagagggagggatgggtctGCTGTGTGAATCAGAAGGCTGGCACCCTGACCCTGAGCTGGTGTGGCTGGACAGTAAAGGAGTCCATCTCTCTGCTCGAACTcttgagacacacagagacttcaAGGGATTCTACAGAGTCAAACAACATGTCATTGTCCAGGAGACTGACACAAACCACTTTACCTGCAGAGTCCAACAGAAACGGATCAATgagaagatggagacagagattcACCTCCCTAGTGAGTTATTTGATCCAACCCCATGGAGAATGGCCTTCATTGTGTTATGCTGTCTGGGAGCCATCATTGGGATTGGGTTATCTCTGGCTATCTACTGCATATGTTATAAGAAAGATGACCTCACTGAGCAGCGAGATGACCTCAAGAAGGATAATAATGACATCACTAGGAAGCTAGATGACCACAATGGGAAGCTAGAAATCCTGACTTCTCAGCTGGATTTTGTGAACACAAACTGGAGTCCAGATTTTGAAACCATCAGAACACATGCAGTGGATGTGACTCTAGACCCTGATACTGCACATCGTAACCTCATCCTGTCTGATGACGGGAAACAAGTGAGACATGGAGAACTAAATCAGGTTCTCTCTGACAACAGGAAGAGGTATAAAAATTGGTCCGGTGTCCTCGGAAATGTGGGCTTCTCAAGGAAGTTCTACTATGAGGTGAAGGTGGAGGGGAAGACTGAGTGGACTTTGGGAGTGGTCAGAAGGTCCATCAATAGGAATGAGAGGTCTAGACCGATCCCTTATAAAGGATACTGGActgtggagctgaaggatggaaaGTACACAGCTCACGCTGATTCCCCTCTCACCCTCTTACTGAGAGAGAAGCCCCTGAAAGTGGGTGTGTTTGTGGATTATGAGAAGGGACAGGTATCCTTCTacaatgtggaggccaggtctcaTATCTACTCTTTCACACGCTCCAAATTTTCTAAGAAACTCTATCCATTCTTCAACCCTGGTGGTTCAGATAGTATTTCACTGGTCGTCTGTCCTGTGGatgccactgactgactgttttaAAACAAACAAGGCAGATACAGTATAAACAGCAGTAACTCCTATTGAGAGACTTAATGTACATGAGATCTTAGTTATAGATTTCCTGTCAATCTTTGTTGTTGTGGTAGAGTGGACCAGTTGATTGTTTATTGGATAAGACAGAGAGGTAAAGGTAGGAATGTTGAAAGAGCAATGGGTTGGATCTGAACCCATTCTGGTACTGGACCATCCCAGACCACTGATTTCTTGTTAATGTTTGACTAATCTTTGACGTTTCTTTCACCAATCCCTTGGACTGTTCTGTCTTCATGAGAGTGTGTTATATGTagactgtagctaagaaagtaatactaagtgtatgttgtgtagtaagctgttagtagtccATGTGCCTCACACTAATACTTTGGTCCCTTTTCCCTTTTTTGtatatttcaaaagtgctgaacaagtaGTTATATTGACAACGTCTGTCCTCGCTCGCTCATTTATGGCttcatcgaaattacggattgcctcttatacgctcctcgttcccttatgccatagtttgtacatctcaattgtcagtagaaaccacatttgtttaaacaag

Function

GO: NA

KEGG:

id description
K06712 BTN, CD277; butyrophilin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2160865 lncRNA downstream 1118 62165392 ~ 62166459 (-) True G1888831
TU2160860 lncRNA downstream 13022 62152136 ~ 62154555 (-) False LOC118943840
TU2160830 lncRNA downstream 53356 62110846 ~ 62114221 (-) True G1888806
TU2160836 lncRNA downstream 84197 62080685 ~ 62083380 (-) True G1888812
TU2160785 lncRNA downstream 98066 62060287 ~ 62069511 (-) True G1888766
TU2160867 lncRNA upstream 18909 62221537 ~ 62222170 (-) True G1888832
TU2160894 lncRNA upstream 64957 62267585 ~ 62268415 (-) False LOC110532867
TU2160872 lncRNA upstream 73811 62276439 ~ 62280979 (-) False LOC118943938
TU2160875 lncRNA upstream 73811 62276439 ~ 62280979 (-) False LOC118943938
TU2160880 lncRNA upstream 73811 62276439 ~ 62280979 (-) False LOC118943938
LOC118943840 mRNA downstream 3253 62153905 ~ 62164324 (-) False LOC118943840
XM_036960980.1 mRNA downstream 19849 62119930 ~ 62147728 (-) False LOC118943934
XM_036960982.1 mRNA downstream 19849 62119930 ~ 62147728 (-) True LOC118943934
XM_036960987.1 mRNA downstream 21514 62119930 ~ 62146063 (-) False LOC118943934
XM_036960991.1 mRNA upstream 4633 62207261 ~ 62209682 (-) False LOC118943936
XM_036960992.1 mRNA upstream 4633 62207261 ~ 62209682 (-) True LOC118943936
XM_036960977.1 mRNA upstream 18273 62220901 ~ 62242704 (-) False LOC118943933
XM_036960978.1 mRNA upstream 18273 62220901 ~ 62242704 (-) True LOC118943933
XM_036960997.1 mRNA upstream 55490 62258118 ~ 62273941 (-) False LOC110532867
TU2160862 other downstream 5188 62155228 ~ 62162389 (-) False LOC118943840
TU2160863 other downstream 5188 62155228 ~ 62162389 (-) True LOC118943840
TU2159536 other downstream 1016407 61150056 ~ 61151170 (-) False G1887761
TU2160887 other upstream 58209 62260837 ~ 62267505 (-) True G1888836
TU2160891 other upstream 66994 62269622 ~ 62273827 (-) False LOC110532867
TU2160893 other upstream 67113 62269741 ~ 62273827 (-) True LOC110532867

Expression Profile