RNA id: TU2160893


Basic Information

Item Value
RNA id TU2160893
length 519
RNA type TUCP
GC content 0.52
exon number 2
gene id LOC110532867
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 62258118 ~ 62273944 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGAGAGATGCAGTAACAGTAGCTTGATAGAGAGAGgcagtgtagctagctacagtccAGGCACCTGCTACGCTAATTATCATAACAGGTATTTACTCTAAATCAACATTTTGTTTCGTACATCTTAGTTCATCTGCACATCCCGGTTGTGAGATGAACATGCCATAGCTACAACATCTGAAGATCTATGAGGCCTTCAGCCAGGAGAGCTCTCCCATGGAACAGGAAGTGATGCGCATatactcctcctccccccctccgcTGGACGACGaatcagggggagaggaggacgaTGACGAGTTTGGGGATTTCTCTGGGGGTGTGGCAATGTCATCCAACCAGCCGTGCCCCTCCACAACAGACCCCGCCTCCCTGACCCTATCAACGGTGCACTTTAGTGTTAGtaactcctcctctttctccggAACTACCCATAGCAACGGAATCTCGAAACAGTTCCGAGCAGCTGACGACCTGAAGAAGCCACGGGCGCCGGTGGTGGACCAATCACAGCCCGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2160894 lncRNA downstream 1326 62267585 ~ 62268415 (-) False LOC110532867
TU2160777 lncRNA downstream 28209 62199590 ~ 62241532 (-) False G1888761
TU2160779 lncRNA downstream 28209 62199590 ~ 62241532 (-) True G1888761
TU2160866 lncRNA downstream 47571 62168771 ~ 62222170 (-) False G1888832
TU2160872 lncRNA upstream 2612 62276439 ~ 62280979 (-) False LOC118943938
TU2160875 lncRNA upstream 2612 62276439 ~ 62280979 (-) False LOC118943938
TU2160880 lncRNA upstream 2612 62276439 ~ 62280979 (-) False LOC118943938
TU2160883 lncRNA upstream 2612 62276439 ~ 62310445 (-) False LOC118943938
TU2160885 lncRNA upstream 2612 62276439 ~ 62291495 (-) True LOC118943938
XM_036961001.1 mRNA downstream 7403 62259487 ~ 62262338 (-) False LOC118943937
XM_036961002.1 mRNA downstream 7403 62259487 ~ 62262338 (-) True LOC118943937
XM_036960977.1 mRNA downstream 27037 62220901 ~ 62242704 (-) False LOC118943933
XM_036960978.1 mRNA downstream 27037 62220901 ~ 62242704 (-) True LOC118943933
XM_036960991.1 mRNA downstream 60059 62207261 ~ 62209682 (-) False LOC118943936
XM_036961009.1 mRNA upstream 9510 62283337 ~ 62292950 (-) False LOC118943938
XM_036961010.1 mRNA upstream 11385 62285212 ~ 62293021 (-) False LOC118943938
XM_036961014.1 mRNA upstream 218054 62491881 ~ 62559025 (-) False LOC118943941
XM_036961017.1 mRNA upstream 218280 62492107 ~ 62544306 (-) False LOC118943941
XM_036961013.1 mRNA upstream 218280 62492107 ~ 62559021 (-) False LOC118943941
TU2160887 other downstream 2236 62260837 ~ 62267505 (-) True G1888836
TU2160862 other downstream 107352 62155228 ~ 62162389 (-) False LOC118943840
TU2160863 other downstream 107352 62155228 ~ 62162389 (-) True LOC118943840
TU2159537 other downstream 1118571 61150056 ~ 61151170 (-) False G1887761

Expression Profile