RNA id: XM_036961001.1


Basic Information

Item Value
RNA id XM_036961001.1
length 2795
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC118943937
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 62259487 ~ 62262338 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTACCACCTATAATGAATCAATGTGTTGGACATACTAGACTACCACCTATAAAGAATCAATGTGTTGGACATACTAGACTACCACCTATAATGAAGCAATGTGTTGGACATACTAGACTACCACCTATAATGAATCAATGTGTTGGACATACTAGACTACCACCTATAATGAAGCAATGTGTTGGACATGCATTCTAAGTAAGTGGTATGCAAGTGTGGACTTTGGAACATAGTCCCtatcactccccccctctccccctccatctctcctctgctcctctcttcacACTGAAGTGTCCCTCTAGATGGTACTACTCATTTTCATGACCTACTGTCCCTTTAATTGTATCTTGTACTCTGGAATCCCAAGGCTCTCTCTCTATACGTCTAACTTAACCGGCTACCTCGTCTGCCCTGTATTGAGTGATGCTGATGAGGTTTCTCACATGTTGTTACCCTTCATCATTGATCCAAACACTGTTTCTTATTGCACTGGGCGAGAGATCTTTCAGTATTAGTGGAGGAAATGGGGCAAAGACAAGTCAAGCCATATAGATGAATGTGTGGCCATAGCCTAAAGGGAATCCCCCCAGTAGCTGCATTTTGGTAGTAGTAGAAATAAGCTCATGTGAAAAAGCCTGAAATCCAGACCTGTTCTGtactaacattccactccttgtacttTGTCATATGCCAAAAATTATGTTTGGCATGACATGAAGTGGAATATTAGCACAAACATACTGGTATCCAGTCTAGAGAAAGCCAGGATCCTCTTACTAGTACCCAGGATAGAGAAATACAGGATCCTCTTACTAGTACCCAGGATAGAGAAAGCCAGGATCCTCTTACTAGTACACAGGATAGAGAAATACAGGATCCTCTTACTAGTACCCAGGATAGAGAAAGCCAGGATCCTCTTACTAGAACCCAGGATAGAGAAAGCCAGGATCCTCTTACTAGTACCCAGGCTAGAGAAAGCCAGGATCCTCTTACTAGAACCCAGGATAGAGAAAGCCAGGATCCTCTTACTAGTACCCAGGATAGAGAAAGCCAGGATCCTCTTACTAGTACCCAGGATAGAGAAAGCCAGGATAGAGAAAGCCAGGATCCTCTTACTAGTACCCAGGATAGAGAAACCCAGGATAGAGAAAGCCAGGATCCTCTTACTGGTACCCAGGATAGAGAAAGCCAGGATCCTCTTACTGGTACCCAGGATAGAGAAAGCCAGGATCCTCTTACTAGTACCCAGGATAGAGAAAGCCAGGATCATCTTACTAGTACCCAGGATAGAGAAAGCCAGGATCATCTTACTAGTACCCAGGATAGAGAAAGCCAGGATAGAGAAAGCCAGGATCCTCTTACTAGTACCCAGGATAGAGAAAGCCAGGATCCTCTTACTAGTACCCAGGATAGAGAAAGCCAGGATCATCTTACTAGTACCCAGGATAGAGAAAGCCAGGGTCCTCTTACTAGTACCCAGGATAGAGAAAGCCAGGGTCCTCTTACTAGTACCCAGGATAGATAAAGCCAGGATCCTCTTACTAGTACCCAGGATAGAGAAAGCCAGGATCATCTTACTAGTACCCAGGATAGAGAAAGCCAGGGTCCTCTTACTAGTACCCAGGATAGAGAAAGCCAGGGTCCTCTTACTAGTACCCAGGATAGAGAAAGCCAGGGTCCTCTTACTAGTACCCAGGATAGAGAAACCCAGGATCCTCTTACTGGTACCCAGGATAGATAAAGCCAGGATCCTCTTACTGATACCCAGGATAGAGAAAGCCAGGATCATCTTACTAGTACCCAGGATAGAGAAAGCCAGGATCCTCTTACTAGTACCCAGGATAGAGAAAGCCAGGATAGAGAAAGCCAGGGTCCTCTTACTAGTACCCAGGATAGAGAAAGCCAGGATCCTCTTACTAGTACCCAGGATAGAGAAAGCCAGGATCATCTTACTAGTACCCAGGATAGAGAAAGCCAGGGTCCTCTTACTAGTACCCAGGATAGAGAAAGCCAGGGTCCTCTTACTAGTACCCAGGATAGATAAAGCCAGGATCCTCTTACTAGTACCCAGGATAGAGAAAGCCAGGATCATCTTACTAGTACCCAGGATAGAGAAAGCCAGGGTCCTCTTACTAGTACCCAGGATAGAGAAAGCCAGGGTCCTCTTACTAGTACCCAGGATAGAGAAAGCCAGGGTCCTCTTACTAGTACCCAGGATAGAGAAACCCAGGATCCTCTTACTGGTACCCAGGATAGATAAAGCCAGGATCCTCTTACTGATACCCAGGATAGAGAAAGCCAGGATCATCTTACTAGTACCCAGGATAGAGAAAGCCAGGATCCTCTTACTAGTACCCAGGATAGAGAAAGCCAGGATAGAGAAAGCCAGGGTCCTCTTACTAGTACCCAGGATAGAGAAAGCCAGGATCCTCTTACTAGTACCCAGGATAGAGAAAGCCAGGATAGAGAAACCCAGGATCCTCTTACTGTTTTTTGTTTAAGCTGCTATTCTGTGTTTTCTTATATTCTTCTGTATCTTTACTTTTCATTTTCTTTGTAAAATAAAGAGGACATATATATATTCAGTAAACTGAAACTGATCTTTACAATCACTGTGATTATATAAACACAATATCtgcaaaataaaatacaatttgatttagcttgaatatgtttttatatttctTTTTAGATCCCCCTACCAATGAGATGTTTTAAGGTTCTTTCAGTGTGGTTGCAATAAACACTGTTGTAAATAGGTGAATAAACCTCTTTCTAATATATTACACCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2160777 lncRNA downstream 17955 62199590 ~ 62241532 (-) False G1888761
TU2160779 lncRNA downstream 17955 62199590 ~ 62241532 (-) True G1888761
TU2160866 lncRNA downstream 37317 62168771 ~ 62222170 (-) False G1888832
TU2160867 lncRNA downstream 37317 62221537 ~ 62222170 (-) True G1888832
TU2160865 lncRNA downstream 93028 62165392 ~ 62166459 (-) True G1888831
TU2160894 lncRNA upstream 5247 62267585 ~ 62268415 (-) False LOC110532867
TU2160872 lncRNA upstream 14101 62276439 ~ 62280979 (-) False LOC118943938
TU2160875 lncRNA upstream 14101 62276439 ~ 62280979 (-) False LOC118943938
TU2160880 lncRNA upstream 14101 62276439 ~ 62280979 (-) False LOC118943938
TU2160883 lncRNA upstream 14101 62276439 ~ 62310445 (-) False LOC118943938
XM_036960977.1 mRNA downstream 16783 62220901 ~ 62242704 (-) False LOC118943933
XM_036960978.1 mRNA downstream 16783 62220901 ~ 62242704 (-) True LOC118943933
XM_036960991.1 mRNA downstream 49805 62207261 ~ 62209682 (-) False LOC118943936
XM_036960992.1 mRNA downstream 49805 62207261 ~ 62209682 (-) True LOC118943936
XM_036960989.1 mRNA downstream 56859 62167577 ~ 62202628 (-) True LOC118943935
XM_036961000.1 mRNA upstream 1917 62264255 ~ 62273938 (-) False LOC110532867
XM_036961009.1 mRNA upstream 20999 62283337 ~ 62292950 (-) False LOC118943938
XM_036961010.1 mRNA upstream 22874 62285212 ~ 62293021 (-) False LOC118943938
XM_036961014.1 mRNA upstream 229543 62491881 ~ 62559025 (-) False LOC118943941
XM_036961017.1 mRNA upstream 229769 62492107 ~ 62544306 (-) False LOC118943941
TU2160862 other downstream 97098 62155228 ~ 62162389 (-) False LOC118943840
TU2160863 other downstream 97098 62155228 ~ 62162389 (-) True LOC118943840
TU2159536 other downstream 1108317 61150056 ~ 61151170 (-) False G1887761
TU2160891 other upstream 7284 62269622 ~ 62273827 (-) False LOC110532867
TU2160893 other upstream 7403 62269741 ~ 62273827 (-) True LOC110532867

Expression Profile