RNA id: XM_036961009.1


Basic Information

Item Value
RNA id XM_036961009.1
length 2902
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC118943938
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 62276439 ~ 62310445 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTAGGAACGAAGCTATACAAAATATCTCCACTCAAGATTAGAATCGAATGAGAGAAGTGCCCCCACTTCATGGGGGTACAGTTTAATTAGGTGAAGGTTCTTTGTCGGAAATGTAAAATCTGATTAGCCTGGCTCGTTCTCGTTCACGAACAGACGGGGATTACCAAAGCCCCTCTTACTATTGTAAAGCATACGTCAGCAAAATAAAAAGACTATCCACCCATTTCTACAGCGGATAAATACAGCCCAGACATAGCCTACTACAACACCTCACCCAGGCTACACCAGACGTATCCTAGTCCTAAATGTGAATACCGCAGGTAATTCCACGTATTGTTTACGATTCACCTCCGCTGCATGTGGAGTGTGAGTGTGGACACCTAGAAATATGTTGACTGAGTCACTGCTGCCACGACGCTGACACATTCCAGGAGAGGAGGACTGTCCGGGCTGCCTCTCTTCTGATAAGCATCCTATGGTATTCTGTACAAGTCAAGATGGCGGTGTCGGCAACGGAAAGGGACGCAATAAATACTGAAGATGACCATCACAACGATTCGTTCGGGAACCCCGGGCTTATCTCGCCGGATAGGGAGGACATTACACGGCTTCTGAAGGTGCCATTCACCGGCCGCATCAGAGGTGGTATGAGGCCCGGGAAAAAAGTCATTGTCATGGGCATTGTTGATCTGGAGCCAGACAGCTTTGACGTCAGCCTGACTTGCGGCCGCGGCACAGAGAAGGAGGAGCCACAGCCGGATGTGGCCCTGAAACTCAGCGCTCGATTCGCTGAGCGCCAGTTTCTGCGTAACTCCTGCGTCTCGGGAAAATGGAGCGAGGAGGAGAAGTCTATCGACTACTTCCCCTTCATCCCTGACCAGCCCTTCAGGatggaGATCCACTGCGAACACACGCGCTTCCGGATATTTGTGGATGGAAATCCGCTCTTTGACTTTTTTCACAAAGTTAAATCTTTGCCGTCCATCGATACAGTGAGGATAGAAGGGGGTCTACAGATCACCAAGCTAGGTTAACCAACCCAGCTGCTATGCCAGTGTGTGACATAACAAGAACTCAAtacaggtgaacacacacacctgttactacAATACCCACAATGCAACACTGCAGCAACAGTGGGCCTAGCGCTTTGGAAAGGCCTCGCCCATCCTGGTTTGGTTCTGCCGtcactcctcttcttctttcccctTTATCTTGTCAGGTCTCAACCAAGATCTGACGTTATTGTGACCTTCCTAATTGTTGGTTGAATGGTTGCAATGCAACGcagctctgtgtgtctttgttcCTGAAAGAATTCCTTTGTTTTCTTCCTCAGTTCTGTGTGTGTCAGGGATCTCACAATATAAACGCCTGCTCATGGTTACCAAGCATCCTATGGGGATTTTGCTGAGAGAGGGGGCCCTATTCCAAATGTAATAGGGCACTATTGGGCACtagagtgctatttgggacacagccgtAGAGCACTCAAAAGTATTTGCTTTCATGTGGAGAAATCCTACAATTCTCAGGAGGTTTCTCAGGAATCAACACTATTTATCACGTATAACATCATCACTGTAAATGAGGGTTATCTCGTGGGGTTGACAAGCTCAGTATTATGGGAGCTTCCatttttttccctccctccctgttcttCAATTGGGttttattggttggttggttgtcaTGGTTATTGGCATCCTAACTCAATGACCTACATACAGAGGTTGCATTCTAAATtgcattctattccctatatagtgcactactttgatcaGGGCCTTATATTGGGCTCTGGCCAAAACTattgcactacgtagggaatagggtgccatttggaaaggGAAATGAGGATTATATTGTGGAGTCTCGGCAAGATGTACCGTAGCAGCCTTTTGATTGAAATGTCTTGTAACTGTATGCAATGTATTAATAATGGTGGTTCTCACTCACAGTTTCAGTTCATTGCAACCATTCTCCTCCTGTAGATATAGATATTGCACTGACATAGAGCTATGTGGTAGTGAATAGAATGTATCGTTCATTTGGAGCTTCGTTTACATTGCATATTTAACAGTGATGAATGATTGGTTCGTTTAAAGGGGTAGTTCACCACAAAGTCCAAGTTTATCCGATGTGTTTTATACCTCAACTGTTCTGTGTGGAGCTAATAAACTGGAATTAGAGGTGCCAATCTTTCAGATTCCTTTGGGTTCTAGATGAGAACTGTAGGTTTCTCCAATGGCTCACAGCAGAGTCTAGACAACACAACACGTGGTGTGGAATATGGACTCAGGTGGTGTTTCTAGGCTTGAAAAATTTGCTAGGATGTTTATCTTGGAGTGAACTATCCTTTTAAGGAGTTTGCTTAACTGGACTCTGACTTGTAAATGAAGAAAAACCCCATAGTGAAAACACACCCAGCGATGGCCAGCCTAAACAACCATTCAGTCAAACCTCGCTATCACAGACCAGATTATTACTGTATATGCAAATGGTGGATTCTCTTCCACACTTAAACCAGGGTCGTATTCTTTAGGGAACACCGAAGTGAAATGTTTTGCCCAAAATAAAAAACAGTTGACCCGAAACTGTAACcggtaccctaaccctaaccctttacagacGGTTCCGTTAGCTAGCGGTTAGCGGTTATCGATTAGCGGTTGATTGTTGTGAAGAATAGGAAGGCTGAATGGTGTTATGAATGTACAGCAGCCATGTTTTTCTATGGTAGCATACCagctgggcacagacgtcagttcaacatctagttttgatttaaatttgGTTGAGTTGGCAattaacgtgaattcaacgtgaaatcaacaaagaattccaccatgtcattggatttaggttaaacgtTGGGTGAAAATAAATATCCTTTTGTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2160872 lncRNA downstream 2358 62276439 ~ 62280979 (-) False LOC118943938
TU2160875 lncRNA downstream 2358 62276439 ~ 62280979 (-) False LOC118943938
TU2160880 lncRNA downstream 2358 62276439 ~ 62280979 (-) False LOC118943938
TU2160894 lncRNA downstream 14922 62267585 ~ 62268415 (-) False LOC110532867
TU2160777 lncRNA downstream 41805 62199590 ~ 62241532 (-) False G1888761
TU2160922 lncRNA upstream 23656 62316606 ~ 62316954 (-) True G1888862
TU2160940 lncRNA upstream 54297 62347247 ~ 62347941 (-) True G1888879
TU2160960 lncRNA upstream 86737 62379687 ~ 62381107 (-) True G1888893
TU2160974 lncRNA upstream 104518 62397468 ~ 62398248 (-) False G1888907
TU2160977 lncRNA upstream 104518 62397468 ~ 62398248 (-) False G1888907
XM_036960999.1 mRNA downstream 9393 62258118 ~ 62273944 (-) False LOC110532867
XM_036960997.1 mRNA downstream 9396 62258118 ~ 62273941 (-) False LOC110532867
XM_036960998.1 mRNA downstream 9396 62258118 ~ 62273941 (-) False LOC110532867
XM_036960996.1 mRNA downstream 9399 62258119 ~ 62273938 (-) False LOC110532867
XM_036961000.1 mRNA downstream 9399 62264255 ~ 62273938 (-) False LOC110532867
XM_036961014.1 mRNA upstream 198931 62491881 ~ 62559025 (-) False LOC118943941
XM_036961017.1 mRNA upstream 199157 62492107 ~ 62544306 (-) False LOC118943941
XM_036961013.1 mRNA upstream 199157 62492107 ~ 62559021 (-) False LOC118943941
XM_036961015.1 mRNA upstream 199157 62492107 ~ 62560536 (-) True LOC118943941
XM_036961018.1 mRNA upstream 267728 62560678 ~ 62570675 (-) True LOC118936590
TU2160891 other downstream 9510 62269622 ~ 62273827 (-) False LOC110532867
TU2160893 other downstream 9510 62269741 ~ 62273827 (-) True LOC110532867
TU2160887 other downstream 15832 62260837 ~ 62267505 (-) True G1888836
TU2160862 other downstream 120948 62155228 ~ 62162389 (-) False LOC118943840
TU2160863 other downstream 120948 62155228 ~ 62162389 (-) True LOC118943840

Expression Profile