RNA id: TCONS_00052007


Basic Information

Item Value
RNA id TCONS_00052007
length 1690
RNA type nonsense_mediated_decay
GC content 0.43
exon number 7
gene id XLOC_026707
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 44081620 ~ 44094451 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATGCATGTCGCTGTAATACtttcattttaacttattttacagATTATCACGACGTCTACGCTATTCGTGCACACggtatttttattgtttaccaTGTATCATGACGAATATGAAATGTAATGCACGACATTTCGTATCTTAATACAATGAGCAGCCTCTCCTTAGCAACTTATTTACACCTATGATAACTTTTCACCAGATCACACATCAGAAATATGAGAATATAAGTGGTCTTGAATACTTCTCATGGCTTCGGTTTGGACAGATATTCGGGCTGTTTTGCCCTCGACTGTGTCTGAATTTCCTCTTGACTTTAGTGAAAAGATTGAACTCAGTGTGCTGAAGTGTCTCGAGCTGTCCAGAGATCAGCTGTACAGTGAAGCAGATTGTCCAGTTTCTGCCGAAAGAGCCCAGATCATTATAGATTACTCCTGGGAGAAGCTCAACATTGGCACATGGAGAGATGTGGACAAAGAGTGGAGGAGAGTTTACTCTTATGGCTGCTTGTTCAAAGTATTAAGTTTATGTCATGGAAATCCACCTCAAAACATCATTCAGGAGGCCATTAGGACGTGTGACATGAGTTTGTTGATGGGAGCAGCCATCATGGACAACATTCTGCAAAGACTGGTTGGCATCTTGAGGAATAAAATTAAAACGACGAGTCCAAACAAAGCAGAGTGGAGCGAAGAGCCATGTTCAAAGAAAAGGAAACATGACTGTAAATCCGAGCCTGTATTAAACCCCACTAAGGAAGTTCCCAGGATTCACTGTCCATCTCTGGAGCGCTTCAGATCAGATTTCCTCGATTCTAAGAAGCCTGTGATCATAGAGGGAATAACTGACCACTGGCCAGCTTTCACTCAGCATCCATGGAGCATAGACTATTTAAGGACTGTCGCCGGCTGCCGGACGGTACCGATTGAAGTGGGATCCAAGTACACAGACGAAGAGTGGTCACAAAAGCTCATTACAGTGAATGACTTTATAGACCGCTACATTACAGGAACCGTAAGcaactgaaatactgtatttttgtatatctAAAGTGGCTGTTTTGTCTGTAAAAGCTATTTTAGGTTATTTGCTTTTAGGAGGAAGATGGAGTGGGATATTTGGCTCAGCATCAGCTGTTTGATCAGattttgCCTTTCATTTTGTGCATAATTTAGATGATTGTGAATGTAAAGGGTCTGCAAAGATCAAAGTGCAGGATTAATGGAGTAATTGGTccctaaaagaaagaaaagatctGTTCCAGAGCTGAAAGAAGACATTCGTATCCCAGACTATTGTTGTCTTGGAGAGGGAGATGAGGATGACATTACAATCAATGCCTGGTTTGGGCCTGGAGGGACTGTCTCTCCTCTTCATCAGGATCCTCAACAGAATTTTTTGGCACAGGTGGTTGGACGAAAATACATCCGGCTTTACAGCCCAGAGGAAACAAAAAGTCTGTATCCACACGAGTCGCAGCTACTCCATAACACCAGTCAGGTGGAGGTGGAGAATCCAGACCTGGTGAAGTTTCCAGATTTCAGTAGAGCCTCTTATGAGGAGTGTGTTCTCTGTCCTGGGGACGTCCTCTTCATCCCACTACAGCACTGGCATTATGTGCGATCCCTAGAGCTCAGCTTTTCTGTCAGCTTTTGGTGGTCCTGATTTGTACTGAATAAACCAGCATTCTCA

Function

GO:

id name namespace
GO:0006325 chromatin organization biological_process
GO:0048511 rhythmic process biological_process
GO:0070544 histone H3-K36 demethylation biological_process
GO:0000086 G2/M transition of mitotic cell cycle biological_process
GO:0032922 circadian regulation of gene expression biological_process
GO:0007049 cell cycle biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005634 nucleus cellular_component
GO:0016706 2-oxoglutarate-dependent dioxygenase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0051213 dioxygenase activity molecular_function
GO:0003682 chromatin binding molecular_function
GO:0051864 histone demethylase activity (H3-K36 specific) molecular_function

KEGG:

id description
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-040718-411 Predicted to enable chromatin binding activity and histone demethylase activity (H3-K36 specific). Predicted to be involved in G2/M transition of mitotic cell cycle; histone H3-K36 demethylation; and regulation of gene expression. Predicted to act upstream of or within chromatin organization and rhythmic process. Predicted to be active in nucleus. Orthologous to human KDM8 (lysine demethylase 8).

Ensembl:

ensembl_id ENSDART00000168829

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051995 lncRNA downstream 192180 43878456 ~ 43889443 (-) True XLOC_026703
TCONS_00051994 lncRNA downstream 206494 43866785 ~ 43875129 (-) True XLOC_026702
TCONS_00052486 lncRNA downstream 395154 43661692 ~ 43686469 (-) True XLOC_026698
TCONS_00053099 lncRNA downstream 499268 43579490 ~ 43582355 (-) False XLOC_026698
TCONS_00052485 lncRNA downstream 892538 43187194 ~ 43189085 (-) True XLOC_026695
TCONS_00053100 lncRNA upstream 17319 44111545 ~ 44124370 (-) True XLOC_026708
TCONS_00053101 lncRNA upstream 238521 44332747 ~ 44335853 (-) True XLOC_026709
TCONS_00053102 lncRNA upstream 1445560 45539786 ~ 45543451 (-) True XLOC_026716
TCONS_00052022 lncRNA upstream 1682154 45776380 ~ 45778109 (-) True XLOC_026717
TCONS_00052487 lncRNA upstream 1737851 45832077 ~ 45834382 (-) False XLOC_026719
TCONS_00052003 mRNA downstream 21586 44048907 ~ 44060037 (-) False XLOC_026706
TCONS_00052005 mRNA downstream 21586 44055307 ~ 44060037 (-) True XLOC_026706
TCONS_00052004 mRNA downstream 21721 44048977 ~ 44059902 (-) False XLOC_026706
TCONS_00052001 mRNA downstream 68819 44002947 ~ 44012804 (-) False XLOC_026705
TCONS_00052000 mRNA downstream 68875 44002300 ~ 44012748 (-) False XLOC_026705
TCONS_00052011 mRNA upstream 447096 44541322 ~ 44753325 (-) True XLOC_026710
TCONS_00052013 mRNA upstream 1100993 45195219 ~ 45245607 (-) False XLOC_026711
TCONS_00052012 mRNA upstream 1100993 45195219 ~ 45245607 (-) False XLOC_026711
TCONS_00052014 mRNA upstream 1100993 45195219 ~ 45250924 (-) True XLOC_026711
TCONS_00052015 mRNA upstream 1167161 45261387 ~ 45281350 (-) True XLOC_026712
TCONS_00051981 other downstream 1215423 42866083 ~ 42866200 (-) True XLOC_026691
TCONS_00051964 other downstream 2769480 41312022 ~ 41312143 (-) True XLOC_026680
TCONS_00051939 other downstream 3551844 40526882 ~ 40529779 (-) False XLOC_026667
TCONS_00051938 other downstream 3551845 40526879 ~ 40529778 (-) False XLOC_026667
TCONS_00051924 other downstream 3922936 40154294 ~ 40158687 (-) True XLOC_026658
TCONS_00052055 other upstream 3100911 47195137 ~ 47195234 (-) True XLOC_026732
TCONS_00052070 other upstream 4983536 49077762 ~ 49077879 (-) True XLOC_026748
TCONS_00052082 other upstream 5720971 49815197 ~ 49815287 (-) False XLOC_026760
TCONS_00052087 other upstream 6009845 50104071 ~ 50117962 (-) True XLOC_026764
TCONS_00052109 other upstream 7453907 51548133 ~ 51548250 (-) True XLOC_026779

Expression Profile

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