RNA id: TU2160883


Basic Information

Item Value
RNA id TU2160883
length 3355
lncRNA type read_through
GC content 0.41
exon number 4
gene id LOC118943938
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 62276439 ~ 62310445 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCTGTAAGGTGCTTCAAATGGACCCTTCCTTGGTTTACCCCTATAGGCCACTGCACTGACTGAACCCTGAACAGTGCATCACATTCAGCATGGGGGGATAGTGAGTGGTtggtaatgaatgtgtgtgtgctatATGAGACGTTCGGTCTCTGAACATCATTACAGTAGGCAATCCATGACAATATTCTGTGGGATGCAGAATTGTTCAGTAGGCTGCATATGCACAGGTCTTTTCTGTGAGAGAGCAATAAcgtcctcctctctgtctttttctcctgGATGGTCACACAGGGTTTTCCTGAGGTACTAAGATGGAGAACTATTTTTTATGTTTGGCATGACAGGCACTCATTTCCATAAGGAAACTGCAGTAGGCTATTAGGAAGGCAATacggaggacagggagagagagtttgTATGAACCAGCCCAATGCACTGACCTCAACAGTATTGTATCCTTAATGTTGTGTTAGTCTGGGTGTGTTTCGGGGGGCTGATTTCATTGTCGGTGCTGATCTGGCTGTAGTGAGTTGAAAACCGTCCCTCGTGAAACCACACCTTCTGGCTGTAGTGAGTGGGAAAACATCCCTCGTGAAACTACAACTTCTGGCTGTAGTGAGTTGAAAACATCCCTCGTGAAACTACAACTTCTGGCTGTAGTGAGTTGAAAACATCCCTCGTGAAACTACAACTTCTGGCTGTAGTGAGTTGAAAACATCCCTCGTGAAACTACAACTTCTGGCTGTAGTGAGTGGAAAACATCCCTAGTGAAACTACTTCATTTTAAATACAAACAAATATCCAGTTGCCCCATGGGAAAATAAGTAGGCCTATATGATTCACATTGGAAATCCTTAAGAGACCTAATAATACATCTATGTATAAAATACCAAATTGTGGTTAAAACCATGAGGCAGAATAAAAGACGTGTTCTATTCTTAATAATGTCATACATGTCATCTCGCCTGTGGTTCAGCCTGTTACTCTAGCATCTCGCCTGTCACTCTAGCATCTCGCCTGTGGTTCAGCCTGTCAGTTGTGGTCTAGGGGTCAACTTGAGAGGTCACTCACTCCCGTGACGCTGTATATCCAGGAAGACCGGGGGGAGGGAGATAACACAAACACTTCCTGATTCACAACATGGGGCGGGGGCTTATTCTGGAGGGGCACAACAACATTTACATAGAAATATATTGTGTAGAACAGTCATGACTGTCTAATGTGAAATAGGGAATGGTAACCAGTCTATACTTCATATCTCTATCTGCAACAGCCTAGTAAATGGTGCAtccttttaatttttattttacctttatttaactaggcaagtcagttaagaacaaattcttattttcaatgacgcctaggaacagtgggttaactgcctgttaactgggcagaacgacaaatttgtaccttgtcagctggggatatgaacttgcagctagtccaacgctctaaccactaggctaccctgccgccccactactGACTAAGCCCCTAAAAGGCTTGTTTTGTAACTTTGTGTCTCATGATCCTAACTCCTCTAATAGGACTGACATTCAAGCAAACATGCAGTACAGAAAAAACATTACATTGgtctttttacaaaaaaaaaaaacggtataAATACTGATGAATCAATCAAGGCTAATTGGAAGAAATCAGGTTTGGATTTGATTGAAATGAGTTACTGTTATTGGATTTGAACGAGATGGTGTATTGCTGGAACACAGGAGCTAGTAGGACTTTTCCACAATGTGAAATACCTGCAGTGCGCGTTTGATTGAACTCAGCCCTTGGGTCTACAGCTGCAGCCTGCCACAACGCAAATACCATTCAACCCACTCTGACCTACATTGGCCTCAGAAAAACAGCAGAAAAACAAGTAAGACTTTATAAAAATAAGACTTTTGGTTTGAACTGAATGTCATTGCTCCCCGATTGTAATCTGATGATGTTAACATGCCTTCCCATTTTCTACATATTTTGAACATGGCCTTGGTTTTTACATGAGAAAATGTGTCTGTGCTTTATAGGCAAAGCGTTTCGGTACACCTGTGTTGTTGacagacctgggtttaaatactatttgatatcatttcaaatactttatctgaGCTTGactggcacaatggaaccaatagaatagtcacaAGGACTGCAAGCCCCGCCCATCAGGCACTCCAGGCATACTAGACGAGAGCAAACGGAATGCTTTTGAAAGATTTCAAGTAGTAATTGAACCCCGGTTTGGTTGTAGAATACAAGTACTATCTGAGCATATTGTATATCTGAGAAGCCAAGATTATAGGTTTTCCTAGTTTTTTGTTTGTAGACTTTACAAAACATGTGAGATGTATTTTTGTTCTTTCTACCAGTGGTGTTATAGCCTAGTGAAGCATTAAACTGCTGTTGGAAGGAAAAGACACGAGTCAATGGGTATgtaccaaatggtaccctattccttaaCAAGTgacacttcttttgaccagagctctatgggccctggttcaaagtagtgcactacggtacatagagaatagggtgtcatttgggatgcagtaatTATTATTGCTTTTTTGGAAAAGCAAACTGTAGTTATTATGGAGTGTCATATGTAGGTTAGGTTgtgctgttgttgatgttgtACTATAGGGTTTCCCTTTTCATTTATCAAGAACAAGaccatttttatatattttttaaaacagtgCCTGTTAAATTAAATATTATAAGATGAATGCTTTTGAATTACAAGACTATCTATAAAGTTAGGTTTGATCAAGTTGTTCTCTCACCAATTGTCATCAGATGAGGATAAAGGATTTAGGATGAGAAGTTTGACCAGATCCAGTGTAAAATAAGTCTGTCTGCTACAACATGTAAAGGGGTTGTTTCTGTCTGATGTAGCTAGtgttgtctgactgactgactcaggaAAGAAGATCCCTGGTTAACAGGTTCATTCTCTATTCTGGGTTTTCAACAGAGGATCCTGCATATAACCAGTCCCACAGGAGCAATACAactctttgtctgtgtcccaAAGGGCAATCTATTCCtttatatagagcactactttcaactggtcaaatgtagtgcactatgtagggaatagtgtgtcatttgggacacgcAGACTTATTAGACACTATTTCCTAACTGAATGAAACCAAGTTGAGTCATTCATGGAGAATTGTAACATTTTGCATTTAGAGCATGTTTTGTTTGTGTTCATTAACGGAGTAATTCCACTAGTTGTGCTCTCTTCCTCGTCAAACGTTTTCGTTTCTCATGCTTCTGTTAAAACGACTACTTCGTAGACCAATAAATGTGTCATCTTGGAATGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2160894 lncRNA downstream 8024 62267585 ~ 62268415 (-) False LOC110532867
TU2160777 lncRNA downstream 34907 62199590 ~ 62241532 (-) False G1888761
TU2160779 lncRNA downstream 34907 62199590 ~ 62241532 (-) True G1888761
TU2160866 lncRNA downstream 54269 62168771 ~ 62222170 (-) False G1888832
TU2160922 lncRNA upstream 6161 62316606 ~ 62316954 (-) True G1888862
TU2160940 lncRNA upstream 36802 62347247 ~ 62347941 (-) True G1888879
TU2160960 lncRNA upstream 69242 62379687 ~ 62381107 (-) True G1888893
TU2160974 lncRNA upstream 87023 62397468 ~ 62398248 (-) False G1888907
TU2160977 lncRNA upstream 87023 62397468 ~ 62398248 (-) False G1888907
XM_036960999.1 mRNA downstream 2495 62258118 ~ 62273944 (-) False LOC110532867
XM_036960997.1 mRNA downstream 2498 62258118 ~ 62273941 (-) False LOC110532867
XM_036960998.1 mRNA downstream 2498 62258118 ~ 62273941 (-) False LOC110532867
XM_036960996.1 mRNA downstream 2501 62258119 ~ 62273938 (-) False LOC110532867
XM_036961000.1 mRNA downstream 2501 62264255 ~ 62273938 (-) False LOC110532867
XM_036961014.1 mRNA upstream 181436 62491881 ~ 62559025 (-) False LOC118943941
XM_036961017.1 mRNA upstream 181662 62492107 ~ 62544306 (-) False LOC118943941
XM_036961013.1 mRNA upstream 181662 62492107 ~ 62559021 (-) False LOC118943941
XM_036961015.1 mRNA upstream 181662 62492107 ~ 62560536 (-) True LOC118943941
XM_036961018.1 mRNA upstream 250233 62560678 ~ 62570675 (-) True LOC118936590
TU2160891 other downstream 2612 62269622 ~ 62273827 (-) False LOC110532867
TU2160893 other downstream 2612 62269741 ~ 62273827 (-) True LOC110532867
TU2160887 other downstream 8934 62260837 ~ 62267505 (-) True G1888836
TU2160862 other downstream 114050 62155228 ~ 62162389 (-) False LOC118943840

Expression Profile