RNA id: XM_036961006.1


Basic Information

Item Value
RNA id XM_036961006.1
length 6982
RNA type mRNA
GC content 0.47
exon number 21
gene id LOC118936589
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 62343401 ~ 62415570 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATGACGCTTTCGCTGCCGAATTCATGGTCAATTGTAGGATAAATGCGCTAGTTGGGTGAACCGACAGAGTCCGACATGCTCCGTTTTGGACGTGCTGTGAAGCGGAAGTTGACAGGCTCTCTGTAAGTAGGCTACTAAACGTCTCCTGGAGGAGAAGGACTATTTCAGTTGGCGGAGGGAAGAATGAAGGCAGACGAGGAagctcctcccccctccccggGGCTGGGGGGTTCGGCGATCCGGTGTCGGGAAGTGTGTCGGTCGTACGGTGAACTCAAAGTCCTGAGTAATCTCAACTTGACCGTGCCACAGGGACAGATCTACGGCCTGCTGGGTCCGAGTGGGTGTGGGAAGACCACACTGTTGAAATGCATTGTGGGAACACTGAAGATCTCCCGAGGGCACATCAGCGTGTTGGGGAAGCCGCCCGCATTTCCTGGTCACCAGGTCCCTGGGAGGATGGTGGGGTACATGCCACAGGACCTGGCGTTGTACAATGAGTTTACCATCAGTGACACTCTGACGTTCTTCGGAAGGATCCACGGCCTGTCATCTACGGACACCCAGGCACGCATGGACTTCCTGGTGGACTTCCTGGACCTACCTCAGAAGAGCAAACTAGTCCGAAATCTCAGCGGAGGGCAGAAACGGAGGGTGTCTCTAGGAGCGGCCTTACTTCAGAACCCCCAGTTATTGATTCTGGATGAACCCACAGTCGGGGTGGACCCTGTGCTGAGAGCCAAGATCTGGCAGCATCTAGTAGAGATTGTGAAAACTGGAAAAGTATCAGTCGTCATCACCACTCACTACATCGAGGAGGCCAGGCAAGCCAACGTGGTGGGTCTGATGAGGAATGGCCGACTGTTGGCCGAGGGACATCCAGAAACCATGATGAAACAGCACAATGCACCTACCCTGGAGAAAGCCTTCCTGCAGCTGTGTGAGACCTCAGACCAGGTGGGCTCCAAACACAGCACCTCCCCTCTGGGCGGGGTCCTAGAGAGCAGCCAATCATTCGAGAGCGGCCGGGACGAGAGTCAACCAATCCTGGGAGTCGGGCCGGGACCAGTTGAAGAGCTGCCCAAATACTCAGcggacTGGAAGGTACGAGTCAGGCATGTGATGCCAAAGTGGAGGAACATCGCAGCTCTGATTATCAAGACCACGGTGCGGATGAAGAGAATGCCAggGTCCCTGTGTTTCCAGTTCCTTCTGCCAGTCATCCAGATCTCTCTGATGTGTCTGTGTATCGGAGGAGACCCCAAAGAAATACAGGTGGCTGTGGTCAACAATGAGACCTCCTCCAGCTCCTATAGCCAATCCCTGCTCTCCTTCCTGGACAACTCCAGCGTGCAACAGGTGAACCTGTCCCATGCTGAGGCTTTTGCAGGGGCCTATAACGGAGAGTACTGGGCCGTCATCGGGTTTGGAAAGAATTTTACCAGCTACCTGACCAAGAGGATGATCCAGCGGCAGGTCTCTAAGGAGGTGGTGGATGGAGGGTCGGTGCACGTCTGGTTGGACCTGACCAATCAACAGATCGCCATGATGCTTCAGAAGAAACTAGCCGATGCCTTTGAGGACTTCGTCCAGTATAAGATGGGGAGCATGTCTTACCTGGTCTCTCTTCCTGTCAAGTTTGAGGAGCCCATCTATGGCAGCATGAACTCAGACTTCACCACGTTTGTGACGCCAGGAGCCGTTCTGAGcATCACGTTCTACCTGGCAGTGGGCTTGACGGCTCTGTCCTTCGtgatagagaggaaggagggactAATGGACAGGTGCTGGGTTGCAGgtgttaGTTCATTGGAGACTGTGCTGGCCCATCTCATCTCCCAGCTGTTTGTCATCAGCATCCAGGTCATTCTACTACTGCTCTTAATGCTGCTCGTcttcaagatccCTAATGAGGGGAGCCTGGTGTTGGTTATAGCTCTGATTGGGCTGCAGGGTGTGACTGGCATCTCCTTTGGTCTGGTCATCTCATCTGCCATCGATGATGAACAGAACGCCAACCAGGCTGCCCTGGGTGTCTTCTACCCCAACCTCATCGTCAGTggtATAATCTGGCCTGTGGAGTGCATCCCCTATCCACTACGTTACATCAGTTTGGCCCTGCCCCAGACCTACGCTTCTGAAGCCCTACGATGCATCATGtacagagGCTGGGGTCTCTCCAGGATGATGGTGTGGCGAGGCTTCGCTGTCACCCTGGGCTGGAACACTTTCTTCGTCATCCTGGCCATCGTCATCCTCAAGCTGAGGACCTGAGACGTCTACCCGGGGGGGAGGGGGGCTTCCTAGTCTCAGGATGTCTGTGTCGGGGGACACTGTGCTTTAAGGGAGAAAGTGCTGCTTTTCCAGAGGTCATCTTGCAGACAGACCCTCACCCACACCGACACGCACAatcacaccccctcctcccccctcctgctTGCCAACTAGCTAACCCTGAGAACCAGAGTCTATGGGTGAAGGACTACTAGGTGGGGCGAATCATTCCAAATCTTGCAGGTAGAACTCTACTTCATAGAAAGGATAGCGTTCGCTATTCCATTAGAGAGTTGTGGCTGCTCTTTTATGTTGTCGTCTTTCATGCTGCAATGCTTTGAATGTTTCAACCGCCTGAATCTGCCCTGCAGGCAATGTTTCTCAACCCAGTTGTTTTACAGCCTACTTTATTACATAcagcccagctagcacatttggttcctttgAAGTGGTAGGAACGTATgttttttggtttcacattggttgtgggaagGAAGCCATagtttcctgaccggtaaaactGAAAAGTTCTTCAAACATTCTGAGAAGAGAAGTTCCAGGAACAAGCTAAATTGTCACGTCCTACTTCTCTGAACTAtctgagaacattcccaatgtcaaaccagttggagaacattaccaacattgaaatgaaatgtAGCTGTATTTGAACTTATATGAAACGTTGAAATACATAACGTAATGAAATACCAAAATACGTTTATTTTGTTGTCAAGTTcattaaatgtgctgagaatgttccaaagccaattaactatcctgcaccattcccgggaagttgtgggaaggttgtatgctaAATAACCATAGAACAACCACGCTCtgaccaagctctaagaaacctatggttctcagaacgttatgtgcttgCTGGGAGTATTGTCTGATTCACAGTGCAGGGCCGGGCCAAGCTGTACTGGGCTAGCCTGGTGACGCGTCCACCATAGCTGCTGAAACCATGTTGGAAAGGATCGTGTGAAGAGAAAATATCAGAGCCAATAACGGTTCAGGTCGTTGCTATAGTGTGAATCAGACATCAGTCCAACGGCTGGTGGAGCCAGAGAACtgaggttgagaaacactgtggagtagaagtgctgatctagggtcaggtcctccctgtccataaTAATAATGATTTATTGTGATGCAAacggctaaactgatcctagatcaacacccttactctgagacgcttgataaTAGGGTTCCTGATCACTGTCATGTATGATCTGACCTTAGGCATGTTTAACTTGTACCACCTGTTCTCAACATAACACTGCATTGATTGGAGGGTTATATTTAGAGTTGCTGTTGAGGGTTTATGAATAACCTCTTCTACAGTATATGTTGACGGTATTTACACACATGATAGAGAgatttattatactatatatttcatattttttgaGGGAACTGTGTGTAAAAAAAAGAATACAATTTGAATGTTTTTGGTATTGTGGTGTTACTGGATAGAGCTCTTCTTAGCTACTGGTGTGTGGGTAAAGAATGGCCAAGAAGGACTCCCGTTTCACAGACGTTTTACTGAAGGATGTTCTCTGATGATGGGAGTTCCTGTTCAGTAGATGTTCTTCTACAACTGGTGGCGACACCGGCTCTGTCCAGGCGCTCGGCCCGGCTCTGTCCAGGCGCTCGGCCCGGCTCTGTCCAGGGGCTCGGCCCGGCTCTGTCCAGGCGCTCGGCCCGGCTCTGTCCAGGCGCTCGGCCCGGCTCTGTCCAGGCGCTCGGCCCGGCTCTGTCCAGGCGCTCGGCCCGGCTCTGTCCAGGCGCTCGGCCCGGCTCTGTCCAGGCGCTCGGCCACAGAACGATGTCCACGTCCGTGCGATTAGCATGCGAGCAAACCTCCCAGACAACTGACTAACCTCATCATGGCACGCCCACCAACCAATGAGCGACTAGCAGAAGGTGGACAGTAGAACCCACGGGGGAGGAGCTATCCCATCTGCACTACAGTATGGATAGAAGTATATTTTGATGAACTGAAATGCTAAACTCAATGTCggacaaaaaaaaaactaaacttaTTTTTGTCCACCGCTATTTCCAGGGGCCTCTGGGTCTGAATTCATAAAGCAGAGtggaagtgctgatctaggaccagttttgccatttaaatcataatgaataagattacatggacaggaggggacctgatcctagaccagcctACCAATTCTGAGGTTATTTGTGGATATGAGCTCTGGTCTCTTATCTGTATTTTGTTCTGTTTTGCTTCCTGTTGCCTGTTTTGACAGGAAGTGGTGACCCTGTCTCTCTATTGGTTACCAGGTGATCTAACCTCCCAGTATTGGCTTGCTGCTGAAGTAGCCTTGGCTTCTGGTTATTGGTGGAATGCAGTATCTCTGGAGTCTGTTGTGTGCCTGTGCTTGCCTCATACCCCTTATAAAAAAGGGCAGTTTGATTGATTGTCCTGACGGTGATTGCATGGGGCTTGTCCCGTCGTGGTTGACAGTTCTGTCAGTGGTCGTGTTTGTTTATTGGGATCCCTGTTatcttttgcagaagcagcagctactcttcctggggtccacctaaaacacacaacatgacaagtaacaaaacactggtacactgatagacaaggacagtcacacacatcTAAAAATACATGAATATACAAcaataaattgtgtgtgtgtgtgtgtgtgtgtgttacctgagaaGGTCATCAGCTTTTAATTACTTTTGTCTTCCCATCACCCCCCTGCTGCTGGACAGAGTGGTGGCTGCTGGGTAAAGCCCTTGGACATGTACCACAGCAAAGAGTATCCAGTCAGTTCTGTTTTAATGACATCTCTCCAGCATGTCCACTCATTGTGTTTTATTACTGCTGgtatattataatgtattattccatatGTGAAATCAAAGTGTCCAACAACAGATATTGAGGTCTCTTAACTTCCCTGAGCCGGGATCAATACATTTCTCTGATCCAATGGGAGCTCTCTATATATTTCAGAGTTTCTATTGGGTTTGGGGACGATTGACAGCAGCCCGTGGTATTCCGGGGGTTCTGAGATTTCGTATCTTGTATTTCTAGTGTCCATCCTTCGAAGTCGTGCCATTGACCATTATTACTGAATGAGAAATATGTTTACACGCATCGAACCGACAAAGTGCTGATGACTTGAACAGACAAAAGGCTGAAACGAGCTCACGGCAGAAGGAGCTAGTTCACGTCATTCGGTTTCTGGTTGATAAATATGATAATAGAGAAGGTACCATGTTAACTTATGAAGCTAAAGCATCTACACCAGCATGTGTGTTACTGAAATTGATTGATGTTTTCTGAAGAATTGTGAATTTTAGACCGTAAGGCAACTTTTCAAGGTAACTGCAGAAGTTACATTTAcagtgcttcccaaatggcaccctattccctacatagtgcactattttttttGACCaaacccctatgggccctggtcaaaagtagtgcactatatatatataaggaatagggttggCATTTGGGGTGCATTCTTAAACGACCTTGTTTAACGTGGTATATTTTAGAAAAGTCTAGTTtgtattatagagagagagagagtgttataCAAATCAAGTTTCAATTGAGGAAAGTGACATAAATATTTATATGTATCGCATTGGGGTCAAGAGGTCAAGGACCATCACGGCTGAACCTTGGAGTTTATTGAGTGTTAATTCATGTGGAACGCCATATTTATTGTGTTTCCTGTTTTGCTCACGCTCCGTTGCCTTTTATGTGTTTTGCTTTGTGCTGCTATTTCCCACATCTTAAGGGACACATCCACATTCATCTGGGATGTATGTGTCTTACAAATGACATAACAGGTGTTATAAACACGTGTGACTGCAGATGACTTGTGACTTATCTTATGACGACTGACATAACACAAACTGGAGTTGGGGTTGGAAATCCATCAAATCCTTCATTAGATTGTAGCCCTGTTATAACaggcataatatatatatatatatataacctgttatGTCAGCTTATGACAACTGActtaacactgtcatgacaccaAACTGTTATCTAGGTCAGCTAGTTACCACTAGCCAACTAGCTTATAGATCATTTTAAGACTATTCATGTCATTTGTTTTGTCAATGATATGTAGGCCTTATGCCAGGGCATAGGGTTCAGGTAACGTGTTAGCTGCCATAATGTataggatgcgtcccaaatggcaccctattctctacatagtgcactcattttttaccagaggcctatgggtactggtcaaaggtagtgcactataaaggcaaTAGGGTAGCATTTGGAACACAGCCACAGCGTCAGCTCTGCTGGTGTCTGTGACTCTATACTTCTACCTCCTCCATGTTCCCCCCCAAAGGGCCTTTTATATATGTATTcataccagacctgggttcaaatactatttggaaTCTTTCGAATCATTTCATCCTTTGCTTTTAGCCTGTCTGGAATACgagatgggcggggtttgcagTTTTGcaactattctattggttccattgtgccaggcaaACATGATCGAGCCCAGCTAAAGGATTTTAAGTTACTGTATTTtgaatatactgaacaaaaataagcgcaagaagtgttggtcctatgttttatgagctgaaataaaagttcccagaaatgttccatgtgcacaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2160379 lncRNA upstream 13630 62329017 ~ 62330287 (+) True G1888439
TU2160393 lncRNA upstream 40676 62302647 ~ 62303241 (+) True G1888450
TU2160363 lncRNA upstream 58571 62276459 ~ 62285346 (+) True G1888429
TU2160344 lncRNA upstream 68659 62275042 ~ 62275258 (+) True G1888427
TU2160342 lncRNA upstream 72326 62270595 ~ 62271591 (+) True G1888425
TU2160378 lncRNA downstream 1368 62415790 ~ 62416166 (+) True LOC118943939
TU2160435 lncRNA downstream 2526 62416948 ~ 62417195 (+) True G1888490
TU2160436 lncRNA downstream 2904 62417326 ~ 62417948 (+) True G1888491
TU2160437 lncRNA downstream 3649 62418071 ~ 62418430 (+) True G1888492
TU2160438 lncRNA downstream 5647 62420069 ~ 62420439 (+) True G1888493
XM_036961008.1 mRNA upstream 4446 62291739 ~ 62339471 (+) True LOC110516194
XM_036960968.1 mRNA upstream 229685 62078017 ~ 62114232 (+) False LOC110531647
XR_005039289.1 mRNA downstream 1238 62415660 ~ 62416165 (+) False LOC118943939
XM_036961012.1 mRNA downstream 11422 62425844 ~ 62471811 (+) False LOC118943940
XM_036961011.1 mRNA downstream 11620 62426042 ~ 62471811 (+) True LOC118943940
XM_021615179.2 mRNA downstream 67209 62481631 ~ 62483395 (+) True LOC110531772
XM_036961027.1 mRNA downstream 162742 62577164 ~ 62760773 (+) False LOC118936402
TU2160160 other upstream 416060 61926746 ~ 61927857 (+) True G1888298
TU2159617 other upstream 1066154 61276775 ~ 61277763 (+) True G1887835
TU2158232 other upstream 2173137 60170348 ~ 60170780 (+) False slc35f3b
TU2158073 other upstream 2555928 59783986 ~ 59787989 (+) True G1886561
TU2158067 other upstream 2557822 59774662 ~ 59786095 (+) True G1886560
TU2160531 other downstream 150103 62564525 ~ 62565083 (+) True G1888544

Expression Profile