RNA id: XM_036961012.1


Basic Information

Item Value
RNA id XM_036961012.1
length 1859
RNA type mRNA
GC content 0.57
exon number 8
gene id LOC118943940
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 62425844 ~ 62471811 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccatgattgagtctttgaatgaagagatacaactgtccagtgtttttggcagctcgttccagtcgctagctgcagagaGCTGAAAAGAGGAGCAACGCAGGGATGCGTGTGCTTTGGGGACcagagggctgcaGGTTGCAGCGGCGACAGCCAACAGGCACATGCAGGATGAGGAGGCGGAGCTGAAGCTCAGCTGACCCCACCCATTTAGTGTGACATCCCTCCTACCCTCACCCATCCAGCCAGCCGGGCCCATGTTCTCTCCAGAGCAGGAAaatatctccccctcctccacctcctcctccaaagTGCCGGTGAAATATGGAGAGCTCATGGTGCTGGGgtACAATGGCTCTCTACCCAACGGTGATCGAGGCAGGAGGAAAAGCCGTTTCAGTCTGTCTAAGAGACCCAAGGCTAATGGGGTCAAACCCAGCACAGTGCACGCTGCCTGCACCGCACAGGCAGCtaaggcTATCAGCAACAAGGACCAACACAGCATCTCCTACACGTTATCCAGAGGTCAGACGGTGGTGGTGGAATATACTCATGATAACAACACAGACATGTTCCAGATTGGTCGTTCCACAGAGAGCCCTATAGACTTTGTGGTAACCGACACGGTGGCAGGGAGCCAGAGTAACTCAGACACCCAGTCAGTCCAGAGCACCATCTCTCGCTTCGCCTGCCGTGTCATGTGTCAGAGGACGCCCCCCTACACCGCACGCATCTACGCTGCCGGCTTCGACAGCTCCAAGAACATCTTCCTAGGGGAGAAGGCGGCTAAATGGAAGACGTGTGACGGTCAGATGGACGGGCTGACCACCAACGGCGTGCTGGTGATGCACCCTCGCCACGGCTTCACGGAGGACTCCAAACCGGGCGTCTGGAGAGAGATCTCTGTCTGCGGTAACGTCTTCACCCTCCGAGAGACCCGCTCCGCTCAGCAGCGGGGCAAgatgGTAGAGGCAGAGAGCCAGGAGCTGGTGGATGGCTCTCTGATAGACCTGTGTGGAGCCACGCTCCTGTGGCGCACGGCCGAGGGCCTGAGCCGCACCCCCACCATCAAACACCTGGAGGCGCTACGTCAGGAAATCAACGCAGCCCGGCCCCAGTGTCCCGTCGGCTTCAACACCCTGGCCTTCCCCTCCATGAGACGCAAGGACACCCCAGATGAGAAGCAGCCATGGGTCTATCTCCAGTGTGGCCACGTCCATGGTTACCACAACTGGGGAAGCCACCGGGACAGAGACAGGCTGGACCGGGACAGAGACAGGCTGGACCGGGACAGAGACAGGCTGGACCGGGACAGAGACAGGCTGGACCGGGaccaggaggagagggagcagggCTGGAGCAGGGAGTGTCCTATGTGTCGAGCCACTGGGCCGTACGTTCCCCTCTGGTTGGGCTGCGAGGCAAGCTTCTATCTGGACACGGCTCCGCCCACCCACGCCTTCTCACCGTGTGGTCACGTGTGTTCCGAGAAGACGGCTGTGTTCTGGAGTCAGATCCCGCTGCCGCACGGAACACACACCTTCCACGCCTCCTGTCCCTTCTGCGCCCAGCAACTGAGTGGCGAGCAGGGATACGTTAGACTCATCTTCCAGGGCCCCCTCGACTAGGGGGACTATTTGTCCTTGGTCGGAACTACTTTCCTTTTTGGTCGCAAAGGAACGACGCTTAGAACCTCCAACTGCCTGGGATtttggggcggggggggggggattttctggaatgttctctccgtttctgtttgtctctctgtgtttttaaGTGACCTTTTctatttttgatttttattggGAATGAAAACAAAGATTTCTATATTTTCATGTGAAACAAGAAGAGAAAGAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2160441 lncRNA upstream 474 62425147 ~ 62425370 (+) True G1888496
TU2160438 lncRNA upstream 5405 62420069 ~ 62420439 (+) True G1888493
TU2160437 lncRNA upstream 7414 62418071 ~ 62418430 (+) True G1888492
TU2160436 lncRNA upstream 7896 62417326 ~ 62417948 (+) True G1888491
TU2160435 lncRNA upstream 8649 62416948 ~ 62417195 (+) True G1888490
TU2160451 lncRNA downstream 15575 62487386 ~ 62489250 (+) False G1888500
TU2160452 lncRNA downstream 15575 62487386 ~ 62489250 (+) False G1888500
TU2160453 lncRNA downstream 15575 62487386 ~ 62489250 (+) False G1888500
TU2160454 lncRNA downstream 15575 62487386 ~ 62489250 (+) False G1888500
TU2160455 lncRNA downstream 15575 62487386 ~ 62489250 (+) False G1888500
XR_005039289.1 mRNA upstream 9679 62415660 ~ 62416165 (+) False LOC118943939
XM_036961003.1 mRNA upstream 11422 62343401 ~ 62414422 (+) False LOC118936589
XM_036961007.1 mRNA upstream 11422 62343914 ~ 62414422 (+) False LOC118936589
XM_036961006.1 mRNA upstream 11422 62343917 ~ 62414422 (+) False LOC118936589
XM_036961004.1 mRNA upstream 11422 62344054 ~ 62414422 (+) False LOC118936589
XM_021615179.2 mRNA downstream 9820 62481631 ~ 62483395 (+) True LOC110531772
XM_036961027.1 mRNA downstream 105353 62577164 ~ 62760773 (+) False LOC118936402
XM_036961028.1 mRNA downstream 105353 62577164 ~ 62760773 (+) False LOC118936402
XM_036961024.1 mRNA downstream 105353 62577164 ~ 62761951 (+) False LOC118936402
XM_036961025.1 mRNA downstream 105353 62577164 ~ 62761951 (+) False LOC118936402
TU2160160 other upstream 497987 61926746 ~ 61927857 (+) True G1888298
TU2159617 other upstream 1148081 61276775 ~ 61277763 (+) True G1887835
TU2158232 other upstream 2255064 60170348 ~ 60170780 (+) False slc35f3b
TU2158073 other upstream 2637855 59783986 ~ 59787989 (+) True G1886561
TU2158067 other upstream 2639749 59774662 ~ 59786095 (+) True G1886560
TU2160531 other downstream 92714 62564525 ~ 62565083 (+) True G1888544

Expression Profile