RNA id: XM_021615179.2


Basic Information

Item Value
RNA id XM_021615179.2
length 1765
RNA type mRNA
GC content 0.48
exon number 1
gene id LOC110531772
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 62481631 ~ 62483395 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acagaaccaggaAGTTTCGTATTACTCTTGTGGAGgccactcctcttcctctgcaCAAACAAGGAAATCGAAAGTTATCTCTGATACTCCTCTGCGCCGTTTGTTAGTGAGTGTCAAAATGGCAGAGGCATTTTTTGAAGATCGGGATTCATTTAGCTGTTCGATCTGCTTGGATATACTGAAGGATCCGGTGACTACTTCCTGTGGACACAACTACTGTATGGGTTGTATTGAGGACTGCTGGGATCAGGACGAACTGAAAGGTGTTTACAGCTGCCCAGAGTGCCGACAGACCTTCGTCCAAAGGCCTGTTCTGAACAGAAACACGTTGCTGGCTAAAGTGGTGGAGAAACTGAAACATACTGCTCTTCAtgctgctcctcctgctgctcctcatGCTGCTCCTCATGCTGCTCCTCATGCTGCTCCTCATGCTGCTCCTCCTGCTCACTGTTAtgctggacctggagatgtggAGTGTGATTTCTGCACTGGGAGAAAACACAAAGCCCTCATGTCCTGTCTGGCGTGTCTGGTctcttactgtgagactcacctcCAGCCTCACTATAATTTCCCTGCCTTAAAGAAGCACATGCTGGTCAAAGCCTCCACACAACTACAGGAGAAGATCTGTTCTCAACATGacaaactgctggaggtttaCTGTCGTACCGATCAGCAGTGTATCTGTTATCTATGTACCATGGATGAACATAAAGGCCATGATACAGTCtcagctgcagcagagaggactgAGAAACAGAAGCAGGTGGGGGagaaacaacagaaatcccagcAGAgaatccaggagagagagaaggagatgcagGAGCTGAGACAGGCTGTGGACTCTCTGAAGCTCTCTGCACAGGCAGCCGTGGACGACAGCGAGAGGATCTTTGCTGAGCTTATCCGCACCATGGAGACAAGGTGCTCTgaggtgaaggagctgatcaGAGACCAGGAGAAGGCTGAAGTGAGTCAGGCTGAAGGCCTCCTGGAGCGACTGGAGCAGGaggtggctgagctgaggaggAGAGATTCTGAGCTGGAGAAGTTCTCTCACACAGAGGACAACATCCACTTCCTCCAGAGGTTTAAAGACCACAGTGCCCCCCCTGTTTCTGAAGAGATGCCTGCCGTCATCCTTAACCAAAGTCGTGATTTTAAGACGgtgatgacctctgacctccagGAAAAGCTGATGCTCTGCTGTAAGGAGGGAGTAGTGGAGATATCAGCAGCAGTGAAAGCTGTCCACATACTGCAGTCAGCAGAGCCAAGCACCCAAGCAGCAGCATCTGTCGCACAATATCACGGGAAGTATTATCAAAAATACTCTTTCAAGAATATATGTGTTCATTGTCGCAAGACAAAAATGTGGCATGGCCCCATGGGTAAATGTTTATAGTTTAATTAAGGAGTGATAATACTATCCTCATCTTGTAGATAAACTATGTGccaggagagagtgtgtgtgtttgttgtgtgtcacagttcaacttttacttttacttcactacattcctagaTAAGTTAACGTACTGTTTACTCCACTGACACCCAAAATTACTAGTTttagaatgcttagcaggaccggAACATTATCCAATTCACGCCCTTATCAAGAGAACagccctggtcatccctactgcctctgatctggcagactcactaaacagagaacatccctggtcatccctactgcctctgatctgatggactcaataaacagagaacatccctggtcatctctgctgcc

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2160441 lncRNA upstream 56261 62425147 ~ 62425370 (+) True G1888496
TU2160438 lncRNA upstream 61192 62420069 ~ 62420439 (+) True G1888493
TU2160437 lncRNA upstream 63201 62418071 ~ 62418430 (+) True G1888492
TU2160436 lncRNA upstream 63683 62417326 ~ 62417948 (+) True G1888491
TU2160435 lncRNA upstream 64436 62416948 ~ 62417195 (+) True G1888490
TU2160451 lncRNA downstream 3991 62487386 ~ 62489250 (+) False G1888500
TU2160452 lncRNA downstream 3991 62487386 ~ 62489250 (+) False G1888500
TU2160453 lncRNA downstream 3991 62487386 ~ 62489250 (+) False G1888500
TU2160454 lncRNA downstream 3991 62487386 ~ 62489250 (+) False G1888500
TU2160455 lncRNA downstream 3991 62487386 ~ 62489250 (+) False G1888500
XM_036961012.1 mRNA upstream 9820 62425844 ~ 62471811 (+) False LOC118943940
XM_036961011.1 mRNA upstream 9820 62426042 ~ 62471811 (+) True LOC118943940
XR_005039289.1 mRNA upstream 65466 62415660 ~ 62416165 (+) False LOC118943939
XM_036961003.1 mRNA upstream 67209 62343401 ~ 62414422 (+) False LOC118936589
XM_036961027.1 mRNA downstream 93769 62577164 ~ 62760773 (+) False LOC118936402
XM_036961028.1 mRNA downstream 93769 62577164 ~ 62760773 (+) False LOC118936402
XM_036961024.1 mRNA downstream 93769 62577164 ~ 62761951 (+) False LOC118936402
XM_036961025.1 mRNA downstream 93769 62577164 ~ 62761951 (+) False LOC118936402
XM_036961029.1 mRNA downstream 93769 62577164 ~ 62761951 (+) False LOC118936402
TU2160160 other upstream 553774 61926746 ~ 61927857 (+) True G1888298
TU2159617 other upstream 1203868 61276775 ~ 61277763 (+) True G1887835
TU2158232 other upstream 2310851 60170348 ~ 60170780 (+) False slc35f3b
TU2158073 other upstream 2693642 59783986 ~ 59787989 (+) True G1886561
TU2158067 other upstream 2695536 59774662 ~ 59786095 (+) True G1886560
TU2160531 other downstream 81130 62564525 ~ 62565083 (+) True G1888544

Expression Profile