RNA id: XM_036961015.1


Basic Information

Item Value
RNA id XM_036961015.1
length 2567
RNA type mRNA
GC content 0.50
exon number 11
gene id LOC118943941
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 62491881 ~ 62560536 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAAAACAAATATTAAGATTAGCTGGAGGGAGTGTGATCCATAATGTTAAATTATATATAGTTTACACCCAGAATGTCCTACATCAGATTTTCCTTGACTTGCATTGCTTTGATGTGGTCCTTCCATTTGATTCGTAAGGACTTAAGTACTGCAATTCAATCAGAACATTATTTAAAATCACTGAGTGACCATGTTCGTAAGCATTCTGTAACTGACATTTTTACTTACGTTCCATGTTAATAGTCTGGTTTCTAACCCAAATACCTGTAGGCCTAATTccgggatgggcaactccaggcCGGAgtggtgtcccccccccccccccctagcaaacacagctgataaCTTTATTTGCGTTTTAAACTGAAGATGATCATTGGAGTCCTGTGTTTTAGCTGGGGGGAAAAGTATGACACTAATCAGGCCTCGAGTTGCCCAGGCCTGCTCTAGCTATGAACCCGTTAGTATGAATGTGTTCATTGACGTGGCATCGATGTCGTGGTTCTGGTATTTGGGGTTCAGAAACGTCGTGAAAAACTGCATTTTCATTGGCCACAGCATTCGGATACAAGCTTTTCATTGGTCCTTGTTTTGGAATGGCATTTCTATATCGTTTTGATCAAATTAATCTATTATCGTGTTTTGTGTGAACTAATTACTAAAATACCTGCCCAATATTCAATACAGTGTGTTGCATGTCATTTTAATGTAAATAAACTCCCAAAGGGACATTAGTTGCGCTAATTTCACCGGTCTCCGCGGTTGTGTCCATACTTGGACAAGCCTATCGCACGATTTTCCTGTCGCCAACATCCTACAAGCCAAACAGTCTCAGTAAGGGTGTGCCTAACGGAGGGATGGCCCAGTTTCAGGAGGAGATGAGGCAGCAGCTGGAGACCTCCATGCACGCAGAGCTGGAGAAACTACTGGACACTGCCACGGGGGTCGACAAGgagGTCTCCAAGAAGGACTTTGATGGATTCAAGAAGCTGTTCCACAGGTTTCTGCAGGTGAAGGGGCCATCGGTGGACTGGCCCAAGATACACAGACCTCCAGAAGACTCAatcCAGCCCTATGATAAGATAGCAGCGCTGCCCCTGCCGGACAGCCTGGCAGACAGTCTCAACAAGCTGGTGGTCGTCAAGTTGAATGGAGGCCTGGGGACCAGCATGGGCTGTAAAGGCCCCAAGAGCCTCATCAGCGTCCGCAACGAGAACACTTTCCTGGACCTCACCGTGCAGCAGATAGAGCACTTGAACAAGAAGTACAACACAGACGTTCCTCTGGTCCTGATGAACTCCTTCAACACGGATGAAGACACCAAGAAGATCCTTCAGAAATACACACACCACCGTGTCAAGATACACACCTTCAACCAGAGCAGGTACCCCCGTATTAATAAAGAGTCCCTCCTGCCTGTGGCCACAGACATTGGTATGATGGGTGAGAACGCTGACGTGTGGTACCCTCCTGGCCACGGGGACATCTACGCCAGCTTCTACAACTCTGGTCTGCTGGATCAGCTCATCACAGAGggcaagGAGTACATCTTTGTGTCTAACATTGATAACCTGGGTGCTACGGTGGACCTGAACATCCTGCATCACCTGGTGAGCCAGCCCAACGGGAAACGCTGTGAGTTCATCATGGAGGTCACCGACAAGACCCGCGCTGACGTCAAGggCGGTACTCTTATTCAGTATGATAACAAGCTGCGTCTGCTGGAGATAGCCCAGGTCCCCAAGGCCCATGTAGATGAGTTCAAATCAGTCACCAAGTTTAAGATCTTCAACACCAACAACCTGTGGATCTCTCTGGGCGCCATCAAGAGGCTGCAGGAGCAGAACGCCATGGACATGGAGATCATCGTTAACCCCAAGACACTGGACGGCGGTCAGAACGTGATCCAGCTGGAGACGGCGGTGGGCGCGGCCATCAAGAGCTTCGACAACGCCCTGGGCATCAACGTGCCGCGATCCCGCTTCCTGCCCGTCAAGACCGTCTCTGACCTCCTATTGGTCATGTCCAACCTCTACAGCCTGGAGGCGGGCTCTCTCACCATGAGCCAGAAGAGAGAGTTCCCTACCACGCCCCACGTCAAGCTGGGCAGCTCCTTTACTAAGGTCCAGGAATACCAGACGCGGTTCGAGAGCATCCCTGATATGCTGGAGCTGGATCACCTGACTGTGTCCGGTGACGTCACGTTTGGAAAACAAGTTTCTCTCAAGggAACGGTCATCATCATAGCCAATCACGGAGATCGTATCGACATCCCGGCTGGAACGATACTGGAGAACAAGATTGTGTCGGGCAACCTTCGCATCTTGGACCACTGAAGCCTTTAACTACTCCTCCAGCACCACAGACACATCCACCACCATCATGTGACGAAGCCAGACACATCCACCACCATCATGTGACCAAGCCAAACACATCAACCccaaccatgtgaccagacatccaCCACCATCATGTGACCAGACACATTCACCCCAATCATGTGACCGAGCCAGACTTGATCCAGACTCCTTTAAATAAACTCCTTAGAGAGAGGTGTCATACCCAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016779 nucleotidyltransferase activity molecular_function

KEGG:

id description
K00963 UGP2, galU, galF; UTP--glucose-1-phosphate uridylyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2161032 lncRNA downstream 7819 62481725 ~ 62484288 (-) False G1888945
TU2161033 lncRNA downstream 7819 62481725 ~ 62484288 (-) True G1888945
TU2160992 lncRNA downstream 71349 62420548 ~ 62420758 (-) True G1888918
TU2160947 lncRNA downstream 76502 62411505 ~ 62415605 (-) False G1888885
TU2161068 lncRNA upstream 16164 62576700 ~ 62576943 (-) True G1888973
TU2161227 lncRNA upstream 106979 62667515 ~ 62670538 (-) True G1889120
TU2161229 lncRNA upstream 108284 62668820 ~ 62669697 (-) True G1889121
TU2161235 lncRNA upstream 131992 62692528 ~ 62692943 (-) True G1889127
TU2161243 lncRNA upstream 156722 62717258 ~ 62717648 (-) True G1889133
XM_036961010.1 mRNA downstream 199086 62285212 ~ 62293021 (-) False LOC118943938
XM_036961009.1 mRNA downstream 199157 62283337 ~ 62292950 (-) False LOC118943938
XM_036961000.1 mRNA downstream 218169 62264255 ~ 62273938 (-) False LOC110532867
XM_036961001.1 mRNA downstream 229769 62259487 ~ 62262338 (-) False LOC118943937
XM_036961018.1 mRNA upstream 142 62560678 ~ 62570675 (-) True LOC118936590
XM_036961031.1 mRNA upstream 209499 62770035 ~ 62776649 (-) False LOC118943942
XM_036961030.1 mRNA upstream 209499 62770035 ~ 62776655 (-) True LOC118943942
XM_036961032.1 mRNA upstream 220563 62781099 ~ 62876729 (-) False LOC118943943
TU2160891 other downstream 218280 62269622 ~ 62273827 (-) False LOC110532867
TU2160893 other downstream 218280 62269741 ~ 62273827 (-) True LOC110532867
TU2160887 other downstream 224602 62260837 ~ 62267505 (-) True G1888836
TU2160862 other downstream 329718 62155228 ~ 62162389 (-) False LOC118943840

Expression Profile