RNA id: XM_036961018.1


Basic Information

Item Value
RNA id XM_036961018.1
length 1873
RNA type mRNA
GC content 0.50
exon number 10
gene id LOC118936590
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 62560678 ~ 62570675 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTACATTTCCCGAGAGCCACCAGCTTTGCGGCGCATGCCTATAAACGATTTACTGGCCACCTCGTGACCACTCTGATTTCAAGAAATAGGGGTGACCTCTTGTTGCTAGAACAGTGGGAGAATAGTCCAAGCTACCATACAAAGATGTCTGCTGAACCTGTTCGTGTTCTGGTGACCGGCGCTGCTGGGCAGATTGCCTACTCCTTGTTGTTTGGCATCGCCAAGGGAGATGTGTTCGGCAAAGATCAGCCAATCACCCTGATCTTGCTGGACATCACCCCCATGTTGCCAGTCCTGGATGGCGTGGTCATGGAGCTGCAGGACTGTGCCCTCCCACTCCTCAGAGAGGTCATCCCCACGGACAAGGAGGAGGTTGCCTTTAAGGACCTGGACGCTGCTATCCTGGTGGGCTCCATGCCCAGGAGAGAGGGTATGGAGAGGAAGGATCTGCTCAAGGCTAACGTGGCCATCTTCAAGAGCCAGGGTGCCGCGCTGGAGAAGTATGCCAAGAAAACTGTCAAGGTCCTGGTGGTAGGTAACCCAGCCAACACCAACTGTCTGATCGCAGCCAAGTCTGCCCCGTCCATCCCCAAAGAGAACTTCTCCTGCCTGACCCGTCTGGACCACAACCGAGCCCGTTCTCAGGTTGCGATGCGCTGCGGCGTGCCAGCCACCCAGGTAAAGAACGTGATCATCTGGGGCAACCATTCGTCCACCCAGTACCCAGACGTTCACCACTGCAAGGTCAACATGGCGGGCAGCGACCTGGCCTGCTTCGACGTTGTTAAGGACGATGACTGGCTCAAAGGGGCCTTCATTTCTaCAGTGCAGCAGAGGGGTGCTGCGGTTATCGCGGCCAGGAAGCTGTCCAGTGCCATGTCTGCAGCCAAGGCTATCTGTGATCACATGAGGGACATCTGGTCAGGCACTCCTGAGGGAGAGTTTGTCTCCATGGGTGTCTACTCCAGCAGTAACTCCTATGGTGTCGCTGAAGACCTCATCTACTCATTCCCTGTTCACATCAAGGACAAGCAGTGGAAGATTGTGGACGGGTTGGCCATCAACGACTTCTCCCGAGGCAAGATGGACGCCACGGCAGCCGagctggtggaggagagggacacCGCCGTCACCTTCCTCAGCGCTTGACTACGCTCCCAGCCACGGCAACCAACCCGGCAACAGCACTTGGACGCAGAACCCACACCTCCAGACTCACGTCTGTGATGCTGCGTTCACGTGCTACTCAGAACTTAGGAAACTCTGGAATATCAAACTTGGAAGATCCATATGAACGGTTTAACGTCATGTTTTAcagcacaaaaaaaaaatgttagacCTGAGTTTCTGGTCATTCTGATAGCACATGAACATGGCATGATACACTCACTGCTGCAGCTCTGTGTCCAAAACATTAATGTTACACACTTCTGAACAGGTTATCCCTGTTTGGATGGTTACCATGCTTACCATGGAATGGAGAATTGTTATGGGTAGTTACTATGACGACCATTGTTCGACTGTTAAATTGTTGCTCAGTCAGAACAATATAGTCCTTAGTGTTTCTAGATTTAACTTAATATTTTTGTGAAAACTCTTGGTTAAATTATTTACCCTcatctttttgttttgtttactaTTTGGCATTTTCCCATTATGATATTTGACAATCTGAATGTGATCACCACCTGTAATCCTACTATTTATAATCGTAGCAGGTGGTTATGGCATAGTCCTGCCACTGGGGGGTAGCACATTCTAATCTGTAAAACCCAGGACAGTAAAGTGTATCAATGGTTAATTATGTTTCAAACCTCTGGATATTATCTCCCTGGACTCACTCCTGACgaaacaataaaacatttatcCTCAA

Function

GO: NA

KEGG:

id description
K00025 MDH1; malate dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2161061 lncRNA downstream 8193 62548077 ~ 62552485 (-) False G1888968
TU2161063 lncRNA downstream 8193 62552006 ~ 62552485 (-) True G1888968
TU2161062 lncRNA downstream 9700 62547641 ~ 62550978 (-) False G1888968
TU2161043 lncRNA downstream 57495 62502146 ~ 62503183 (-) True G1888952
TU2161040 lncRNA downstream 60490 62499662 ~ 62500188 (-) True G1888950
TU2161068 lncRNA upstream 6025 62576700 ~ 62576943 (-) True G1888973
TU2161227 lncRNA upstream 96840 62667515 ~ 62670538 (-) True G1889120
TU2161229 lncRNA upstream 98145 62668820 ~ 62669697 (-) True G1889121
TU2161235 lncRNA upstream 121853 62692528 ~ 62692943 (-) True G1889127
TU2161243 lncRNA upstream 146583 62717258 ~ 62717648 (-) True G1889133
XM_036961015.1 mRNA downstream 142 62492107 ~ 62560536 (-) True LOC118943941
XM_036961014.1 mRNA downstream 1653 62491881 ~ 62559025 (-) False LOC118943941
XM_036961013.1 mRNA downstream 1657 62492107 ~ 62559021 (-) False LOC118943941
XM_036961017.1 mRNA downstream 16372 62492107 ~ 62544306 (-) False LOC118943941
XM_036961010.1 mRNA downstream 267657 62285212 ~ 62293021 (-) False LOC118943938
XM_036961031.1 mRNA upstream 199360 62770035 ~ 62776649 (-) False LOC118943942
XM_036961030.1 mRNA upstream 199360 62770035 ~ 62776655 (-) True LOC118943942
XM_036961032.1 mRNA upstream 210424 62781099 ~ 62876729 (-) False LOC118943943
TU2160891 other downstream 286851 62269622 ~ 62273827 (-) False LOC110532867
TU2160893 other downstream 286851 62269741 ~ 62273827 (-) True LOC110532867
TU2160887 other downstream 293173 62260837 ~ 62267505 (-) True G1888836
TU2160862 other downstream 398289 62155228 ~ 62162389 (-) False LOC118943840

Expression Profile