Item | Value |
---|---|
RNA id | TCONS_00052010 |
length | 1252 |
RNA type | mRNA |
GC content | 0.41 |
exon number | 4 |
gene id | XLOC_026707 |
representative | True |
Item | Value |
---|---|
chromosome id | NC_007114.7 |
NCBI id | CM002887.2 |
chromosome length | 62628489 |
location | 44081620 ~ 44094451 (-) |
genome version | GRCz11_2017_zebrafish_Genome |
species | zebrafish (Danio rerio) |
id | name | namespace |
---|---|---|
GO:0006325 | chromatin organization | biological_process |
GO:0048511 | rhythmic process | biological_process |
GO:0070544 | histone H3-K36 demethylation | biological_process |
GO:0000086 | G2/M transition of mitotic cell cycle | biological_process |
GO:0032922 | circadian regulation of gene expression | biological_process |
GO:0007049 | cell cycle | biological_process |
GO:0045893 | positive regulation of transcription, DNA-templated | biological_process |
GO:0055114 | oxidation-reduction process | biological_process |
GO:0005634 | nucleus | cellular_component |
GO:0016706 | 2-oxoglutarate-dependent dioxygenase activity | molecular_function |
GO:0046872 | metal ion binding | molecular_function |
GO:0016491 | oxidoreductase activity | molecular_function |
GO:0051213 | dioxygenase activity | molecular_function |
GO:0003682 | chromatin binding | molecular_function |
GO:0051864 | histone demethylase activity (H3-K36 specific) | molecular_function |
id | description |
---|---|
ko03009 | Ribosome biogenesis |
id | description |
---|---|
ZDB-GENE-040718-411 | Predicted to enable chromatin binding activity and histone demethylase activity (H3-K36 specific). Predicted to be involved in G2/M transition of mitotic cell cycle; histone H3-K36 demethylation; and regulation of gene expression. Predicted to act upstream of or within chromatin organization and rhythmic process. Predicted to be active in nucleus. Orthologous to human KDM8 (lysine demethylase 8). |
ensembl_id | ENSDART00000188028 |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
TCONS_00051995 | lncRNA | downstream | 199580 | 43878456 ~ 43889443 (-) | True | XLOC_026703 |
TCONS_00051994 | lncRNA | downstream | 213894 | 43866785 ~ 43875129 (-) | True | XLOC_026702 |
TCONS_00052486 | lncRNA | downstream | 402554 | 43661692 ~ 43686469 (-) | True | XLOC_026698 |
TCONS_00053099 | lncRNA | downstream | 506668 | 43579490 ~ 43582355 (-) | False | XLOC_026698 |
TCONS_00052485 | lncRNA | downstream | 899938 | 43187194 ~ 43189085 (-) | True | XLOC_026695 |
TCONS_00053100 | lncRNA | upstream | 17094 | 44111545 ~ 44124370 (-) | True | XLOC_026708 |
TCONS_00053101 | lncRNA | upstream | 238296 | 44332747 ~ 44335853 (-) | True | XLOC_026709 |
TCONS_00053102 | lncRNA | upstream | 1445335 | 45539786 ~ 45543451 (-) | True | XLOC_026716 |
TCONS_00052022 | lncRNA | upstream | 1681929 | 45776380 ~ 45778109 (-) | True | XLOC_026717 |
TCONS_00052487 | lncRNA | upstream | 1737626 | 45832077 ~ 45834382 (-) | False | XLOC_026719 |
TCONS_00052003 | mRNA | downstream | 28986 | 44048907 ~ 44060037 (-) | False | XLOC_026706 |
TCONS_00052005 | mRNA | downstream | 28986 | 44055307 ~ 44060037 (-) | True | XLOC_026706 |
TCONS_00052004 | mRNA | downstream | 29121 | 44048977 ~ 44059902 (-) | False | XLOC_026706 |
TCONS_00052001 | mRNA | downstream | 76219 | 44002947 ~ 44012804 (-) | False | XLOC_026705 |
TCONS_00052011 | mRNA | upstream | 446871 | 44541322 ~ 44753325 (-) | True | XLOC_026710 |
TCONS_00052013 | mRNA | upstream | 1100768 | 45195219 ~ 45245607 (-) | False | XLOC_026711 |
TCONS_00052012 | mRNA | upstream | 1100768 | 45195219 ~ 45245607 (-) | False | XLOC_026711 |
TCONS_00052014 | mRNA | upstream | 1100768 | 45195219 ~ 45250924 (-) | True | XLOC_026711 |
TCONS_00052015 | mRNA | upstream | 1166936 | 45261387 ~ 45281350 (-) | True | XLOC_026712 |
TCONS_00051981 | other | downstream | 1222823 | 42866083 ~ 42866200 (-) | True | XLOC_026691 |
TCONS_00051964 | other | downstream | 2776880 | 41312022 ~ 41312143 (-) | True | XLOC_026680 |
TCONS_00051939 | other | downstream | 3559244 | 40526882 ~ 40529779 (-) | False | XLOC_026667 |
TCONS_00051938 | other | downstream | 3559245 | 40526879 ~ 40529778 (-) | False | XLOC_026667 |
TCONS_00051924 | other | downstream | 3930336 | 40154294 ~ 40158687 (-) | True | XLOC_026658 |
TCONS_00052055 | other | upstream | 3100686 | 47195137 ~ 47195234 (-) | True | XLOC_026732 |
TCONS_00052070 | other | upstream | 4983311 | 49077762 ~ 49077879 (-) | True | XLOC_026748 |
TCONS_00052082 | other | upstream | 5720746 | 49815197 ~ 49815287 (-) | False | XLOC_026760 |
TCONS_00052087 | other | upstream | 6009620 | 50104071 ~ 50117962 (-) | True | XLOC_026764 |
TCONS_00052109 | other | upstream | 7453682 | 51548133 ~ 51548250 (-) | True | XLOC_026779 |