RNA id: XM_036961030.1


Basic Information

Item Value
RNA id XM_036961030.1
length 2533
RNA type mRNA
GC content 0.48
exon number 4
gene id LOC118943942
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 62770035 ~ 62776655 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAGTGGGAATGTGATCAATCTCCATCCGTCTACATTAGCAATCACCCTAACACAGTGACAGACACCACGCAAAACTCAAGCAAATTAGTTTGATTTATTTGGTTTTTAAAAACCCGGAAACCTTCACGATCGACTAACAGGGAAACAACGACAGGGCACGCGCTGGGTGAGAAGTGAGAACCAATAGGCTACAGCTCTTCTCCATAATGCACAGTTCGCACTGTATTTGTTTTTGAGTTGCCGTCTTGAGTTCTCTGTCTTCGGGTTGCCATCCAGACTTCCTCGGTATTGGTGGATAGCCGCATTAGATTCATCTGGTCGCCTTTACCAGGCTACTAAAGGAGAGAAGCTTGGGGATAGGAAGGAGAGAAAAAGTGCACTTACATCGGCCCCTCTCTCGTCAAGCTGCAACATCGGGGGAAATCGAACTATTGGCAAGATCTGGGGGGACCCGTGACTGCCTCTAGCATGATGTCATACCTCAAACAGCCCCCCTACGGCATGAATGGCCTAGGGCTCAGCGGCTCCGCCATGGACCTACTGCACCCGTCTGTGGGCTACCCAGCGACGCCTAGAAAACAGCGTCGTGAACGCACCACGTTCACGCGCTCGCAGTTGGACATCCTCGAGTCGCTCTTTGCTAAAACTAGGTATCCGGATATCTTCATGCGCGAAGAGGTCGCACTGAAAATTAACCTTCCGGAATCCAGGGTCCAGGTGTGGTTCAAGAACCGAAGGGCAAAGTGTCGGCAGCAGGCACAGAGCGGCAACAGTACCAAGGCCCGTCCGGCCAAGAAGAAGTCCTCTCCGGCGAGGGAGAGCACCGGGTCGGAGAGCAGCGGCCAGTTCACCCCGCCTGCCGTCTCCAGCgcagtctcctcctcttcttcctcctcctccaccaatcaCGCGGGGGCGGGCCTCAGCAacacctctacctccatcagcACCGTCTCATCTATTTGGAGTCCCGCCATCTCCCCGGGCAACGGCCCGTTAACACCCGCCTCCGCCCCGCCGCTCGCCGAGCCCCCAGGACCCCCGTCCAACGCCTCCTGCATGCAGCGGTCGGTCTCAGGGTCGGTCTCGGCCACCTCCTCCTATCCCATGTCCTACAACCAGACGACAGGCTACGGCTCCTACAACCCTACCCCGTCCAGCTCCTACTTCAGCGGGGTGGACTGCGGCTCCTACCTGGCCCCCATGCACTCTCACCCACACCACCAGCTCAGCCCCATGACGGCCTCTTCTATGTCGGGTCACCCGCACCACCACATCAGTCAGTCTTCAggacaccatcaccaccaccatcaccaggCTTACGGAGGCACTGGCCTGGCCTTCAATGGTTCAGACTGCTTGGATTATAAAGAGCAGACAGCGGCCTCCTCGTGGAAACTCAACTTTAATGCCAGTGACTGCTTGGACTACAAAGACCAGGCCTCCTGGAGGTTCCAAGTCTTGTGAGGACTACAAAGACCAGGGGACTCATGTCTTGTGATTggtttactttttttttctcccttctgtattttctctccttccctattTGGTTTCCTCACTCATCATTTGTTGATTTTTAAAGAGAAAAAAGTATATGAACTTTAAAAAGTAACAGCAATTATAGTTTGGATGGACAGAAGCTCATTGATTggacttattttttttattattttcaataAACTGTCCCTTTTTACGCTTATGAAAACAAATTGAGAGAGGGCTGTGGGCTTGATTGAAAAGTCGTTTTTACTTTTGTCAATGAAGAAATGTTTCGACCTTTTAACTATGGACTGTTTTAACAAATGTTGTTTCAACCAAACTTCTGTGACCACTAGCGTCCTCCTGTCCTGGCTCTGGCGATGCACTCATGTCTGTCCCTGGAAAGATGAGGATTACCTACCGTCACCGTGCCAGTGCACGCGCTGCTTACCTCCGTCCATTTCCAATCAAATCCTGTTTTTATTTCTGAAATGTGTTATTTTTAGGATGAAAGATATTTTAGTCAGCGACGTAAAGGCGTTgaaatatgtatatatgtatttgGGTCAGTTACAGTGACCACGTTTAGTTGGTGTTTCTGAATTTGAAATTGTTTAATAAGAACTTTGAAAAAACTATAGCCGATGTAAATCATTCCAAAGATAACGAATTGGCCATGaagttccttttttttttttttatatatatacgtTTTCCTTTATAGACAAAATACATTAGACAACTTGAAATGTCCTGGAGAAACGAAATGAGAAAATATAAAAGTAAAACATCATGCTCAATCAGGACTGCAGTTTTTTCAAAAGGAAAAGCTCTTTTTAAAAGTTAAAGAATATTTCGAACATACCCTCCTGACTGGCATTTGTCAATCGTAAAATTTGACATATTTTAACAATGGCACTTGACTTCCTGTTGGAGTCAAATGAATCCTTTTTAAGAATGTGGATTTGCTGTTCCAAGATGCCAGTGAAATGTTGAATGTATCTCAAGGCGAACACCCTCATCCATTCAATAAAGATCCGTCAACTCATA

Function

GO: NA

KEGG:

id description
K09326 OTX1; homeobox protein OTX1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2161243 lncRNA downstream 52387 62717258 ~ 62717648 (-) True G1889133
TU2161235 lncRNA downstream 77092 62692528 ~ 62692943 (-) True G1889127
TU2161227 lncRNA downstream 99497 62667515 ~ 62670538 (-) True G1889120
TU2161229 lncRNA downstream 100338 62668820 ~ 62669697 (-) True G1889121
TU2161068 lncRNA downstream 193092 62576700 ~ 62576943 (-) True G1888973
TU2161268 lncRNA upstream 5986 62782641 ~ 62783284 (-) True LOC118943943
XM_036961018.1 mRNA downstream 199360 62560678 ~ 62570675 (-) True LOC118936590
XM_036961015.1 mRNA downstream 209499 62492107 ~ 62560536 (-) True LOC118943941
XM_036961014.1 mRNA downstream 211010 62491881 ~ 62559025 (-) False LOC118943941
XM_036961032.1 mRNA upstream 4444 62781099 ~ 62876729 (-) False LOC118943943
TU2160891 other downstream 496208 62269622 ~ 62273827 (-) False LOC110532867
TU2160893 other downstream 496208 62269741 ~ 62273827 (-) True LOC110532867
TU2160887 other downstream 502530 62260837 ~ 62267505 (-) True G1888836
TU2160862 other downstream 607646 62155228 ~ 62162389 (-) False LOC118943840

Expression Profile