RNA id: TCONS_00005752


Basic Information

Item Value
RNA id TCONS_00005752
length 4214
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id XLOC_002666
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 15716739 ~ 15724104 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCTTCAaggtgtaagaattgaaatattgcaaatattctgatgtctttgacaattcaaaacatgagctgaaaacagagactggtaacttcacaactcagcaaggggaatgcgggaaaaaccagttcctgctgcatttgcatctgagtctgcttcatccccccaactcacacatatggtcatttcaatgtttgaatgttctagaattaaccaaactgactttaactatcatgtttgatatcatttgaaatgtctcagtgcgattggtacaatggtctcattctctcagaaatagacataatcagaacaataaatatataacttcaggcatcttttgatccactgtgaggggtgtgacactaagtgtgaatgccttttgttatacattcacacccccttccttgagggaattcttggattatttaaggtaaggacTAAGAAaagctcagggcgattctgcctaaccagatcagcccataacatggggtctgccccatgttatgtatatttcaaagtcagGCGAGTTACGTCTTTCCAGCACAAAATGGATTTATATCAACCAAGAGGTTTGGATCTTCTATTCTATCTTCAGCTGCTGTGGCGGACCAATAACAAAGAACACTCCAGATCCGGTCcacatcaaacaaatacaaatgagggCAACAAAAGGTTAGGCCATAACCTGAGAGGCCAAAAGTCTTCCATCTTGCATCTCAAAGCAAGAACCCCTGTGGTGCTAACACCTCACCTGCAGTGAGTCCTCTGAAAAAAGTCTTTGATCAGTCATCAGAATAACAATTATCCACAGCTGATCTTATCAATGGATTCAGCATTGTAGGAGGCTTTGTGATTTCACAAAACAGAGACATGAAAGATCTCATAGTTAAAATCTTCCCAAATTGCTTAATAGCAATGGGACTAAAACCCTGGTTACCTAGAGGCGATAAAGAACTTTACTGCATTGTTCCTGCAAAGACCAATAGCAACAGACTCTATTGTCACGAATCCTGGtggcatttttaaatttgtttttatactataCACATGTTAAACCACATGTCCTGTATGAAAATGGAATTAACTATGTTGAAATTCATGATATTTGTTTCTTTGATCTCCAAAAGTAGAAAACTCTGCTATCCCCTGTATAGCTGCAGTTTAAACTACAAACAGGAGTATAGAGTGTGATAATTAAATTaaccatgaaaatgcattttttacaggATCCAGCTTTGAACATTGCACCTTAACATGCTCCGTAAAAGATATTATATGGAATCAATTTGAGCCGGAACACACCTCATGTTCACATTCTTATGCTGGCTCCCTGCTAAGACAGGACTAAAATTTTGCAACACAATTATAAAAGTTGATTACCATTGTTCGGAGCATTACACTGACACACAGCCACAGGTAAACCCAGGCACATAGATAACACCTTAGTCTTCAAAGACCCAGGAGCCAAATCTCCTTAATTGAGATCGTTTGTCCatgtttatacaaacaaaacacattagcctCACACACATAGAACAGAATAATTAATCTGATGACAGACGAGACAACAAACACCCTCTGACACCCTCTgtcagctgaaaagaaattacACATTTGCATGGCTTTTACAACAAATTGATGGTATAAAACTTCAATAAAGGCGAATTTGCCGATAAATTTAAGGATAGATACACTGACTGTTATGAGGATGGTTGACAAACCAGAGGGCCCCTGGTTTTCCAATCTATCACCAATAACAGGTATAAGTGctaaagtgattaaaattaaacCGAAATGAGGACACTTCTAATAATCACTAGGacatttaaatttgacaaataccATCAATTGTGTTCAAGCCCCCCCacacgcacataaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaccacacaacatacacacacaaacacacacattattatagatataccttcataattatggttaaataatgtgattactatcatgtatgacaaatatcttcacgtttttttcattttgaaaatgaatgtcatttatttgaatgtattgtcatgatgatatgttttatgatgcatactgcttgttatactgttttaataagttgcactgaccttttgatagctttaccttgagtaattcaaaccaagaatatttaatattctccCTATCATTATACCCTATCTCAGTGGTGACAAAGACTTATCTGTTTTTGATTGGACCATTTAAACAGATTGAAAGAGACCTGAGACCAGTTGTACGACTCGCACTTGCTGACTTTTAtgttttgatcatatattttatgcTTAACCTCATGACTTTCTCCAATGCAGAATGACACAAGTTCATAACTGTTCAATCGCTGAGCCATCAAGTTGCTGTTTAGGTGTCCGAGAGAAGGCAGTGTATACACACTGTAGACCCCCACATGCCGATGTCTGCATATCTGGAGATGACCAGATTCATCAGAAGAAGCAGACTATGAGAAGCCCACACGACGTGGACACTTTTGTCAGGGGAAGGACACAGTGGAAGCTATAAAGGCCTGTATGGACTGAATGAGCAGTGCATTCGGGTCAGGCTCATCAAAAGAGGTGAAAACGAGCCTGGACCTGTTTAGCTACCTGCTGAACACGACTTACAACTGATAATGCTGCAGAGACTGTCTTGAATTGCCCCTGAACGACCTCAACAAGGATACATAGTGACCCCATGGACACATTTATATCTGACCCACGGGATCAAATGGGGGTtatctgtaagaattgaaatattgcaaatattctgatgtctttgacaattcaaaacatgagctgaaaacagagactggtaacttcacaactcagcaaggggaatgcgggaaaaaccagttcctgctgcatttgcatctgagtctgcttcatccccccaactcacacatatggtcatttcaatgtttgaatgttctagaattaaccaaactgactttaactatcatgtttgatatcatttgaaatgtctcagtgcgattggtacaatggtctcattctctcagaaatagacataatcagaacaataaatatataacttcaggcatcttttgatccactgtgaggggtgtgacactaagtgtgaatgccttttgttatacattcacacccccttccttgagggaattcttggattatttaaggtaaggacTAAGAAaagctcagggcgattctgcctaaccagatcagcccataacatggggtctgccccatgttatgtatatttcaaagtcaggtatgcatcttttcatcttggatttatctttgataatttgatgttttgtattgatcatttatgaattgactgattgaattggcataatacatttacctgactaataaattgttatgttttgaatgattcaaacagagttcgtgttattatctttagtagattgtggtaatttcatagcaccacaagcccctgttcaggttagtagcggactagaacacggtagacggagcattgcggcacgttacacgatgtctctagagctccgactaacaaattggcatttattcatgtatacttaggctgtaaaaggatatctaaggggatagtccttcacccgataaacttttaatactatttagatagtatagtgattattcaaagttactactagtttaagtacgactggtctgcttaattctatagtaatgatcgttatatgactaaatagctctgtctgatttaggaggtagcagacctatggggaccgcataaaaaatatcctaatctgagtaagtagggttctgcctttttaggatagcggtcaatcgcccctgtttagtgaccaagactgacatgcttgtgcttaagaaattgtatactcggccggtacaagattcaggatgttatagagatcccaatgaacgagaataacataaaatgatgaaccgaagagaatattcaatcataatctaaaataatgtgaaaggaaacaaaataaccttctcaatgttttataattggagtcagataaaacgaggataaacatattaatattctaaaccatctcatactaaaattggagtcagatatgagttaagtttaatataaatcaacattgtgcactggaaagaccgaacatgcagtgaaccttcatccaccattggataccgtcattggaccaactgggtggac

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0021532 neural tube patterning biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0035239 tube morphogenesis biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0001756 somitogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0048513 animal organ development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0006396 RNA processing biological_process
GO:0031016 pancreas development biological_process
GO:0045165 cell fate commitment biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0009888 tissue development biological_process
GO:0030490 maturation of SSU-rRNA biological_process
GO:0060429 epithelium development biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0048568 embryonic organ development biological_process
GO:0021903 rostrocaudal neural tube patterning biological_process
GO:0021906 hindbrain-spinal cord boundary formation biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0021915 neural tube development biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0060485 mesenchyme development biological_process
GO:0048339 paraxial mesoderm development biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0061053 somite development biological_process
GO:0010002 cardioblast differentiation biological_process
GO:0007399 nervous system development biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0007417 central nervous system development biological_process
GO:0007420 brain development biological_process
GO:0030902 hindbrain development biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0030684 preribosome cellular_component
GO:0030686 90S preribosome cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0005634 nucleus cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00004955 lncRNA downstream 85381 15622898 ~ 15631358 (-) False XLOC_002664
TCONS_00004943 lncRNA downstream 630442 15082410 ~ 15086297 (-) False XLOC_002660
TCONS_00004942 lncRNA downstream 632692 15082410 ~ 15084047 (-) False XLOC_002660
TCONS_00005751 lncRNA downstream 632843 15083594 ~ 15083896 (-) True XLOC_002660
TCONS_00006013 lncRNA downstream 673991 15031006 ~ 15042748 (-) True XLOC_002656
TCONS_00004964 lncRNA upstream 212962 15937066 ~ 15963981 (-) False XLOC_002668
TCONS_00005753 lncRNA upstream 212962 15937066 ~ 15963985 (-) False XLOC_002668
TCONS_00005754 lncRNA upstream 212962 15937066 ~ 15963986 (-) False XLOC_002668
TCONS_00006015 lncRNA upstream 212962 15937066 ~ 15964029 (-) False XLOC_002668
TCONS_00006016 lncRNA upstream 214809 15938913 ~ 15963985 (-) False XLOC_002668
TCONS_00004957 mRNA downstream 43877 15648857 ~ 15672862 (-) True XLOC_002665
TCONS_00004952 mRNA downstream 71765 15617741 ~ 15644974 (-) False XLOC_002664
TCONS_00004951 mRNA downstream 71765 15617741 ~ 15644974 (-) False XLOC_002664
TCONS_00004953 mRNA downstream 71799 15618098 ~ 15644940 (-) False XLOC_002664
TCONS_00004956 mRNA downstream 71835 15637190 ~ 15644904 (-) True XLOC_002664
TCONS_00004958 mRNA upstream 91761 15815865 ~ 15854743 (-) False XLOC_002667
TCONS_00004959 mRNA upstream 91773 15815877 ~ 15879569 (-) False XLOC_002667
TCONS_00004960 mRNA upstream 92691 15816795 ~ 15849027 (-) True XLOC_002667
TCONS_00004961 mRNA upstream 157205 15881309 ~ 15919839 (-) False XLOC_002668
TCONS_00004962 mRNA upstream 171814 15895918 ~ 15910974 (-) False XLOC_002668
TCONS_00004954 other downstream 97724 15618216 ~ 15619015 (-) False XLOC_002664
TCONS_00004948 other downstream 376407 15337310 ~ 15340332 (-) False XLOC_002662
TCONS_00004937 other downstream 776393 14937827 ~ 14940346 (-) True XLOC_002655
TCONS_00004928 other downstream 984340 14732283 ~ 14732399 (-) True XLOC_002653
TCONS_00004922 other downstream 1228585 14326826 ~ 14488154 (-) False XLOC_002649
TCONS_00004975 other upstream 1353329 17077433 ~ 17083377 (-) False XLOC_002675
TCONS_00004978 other upstream 1380194 17104298 ~ 17132910 (-) True XLOC_002678
TCONS_00004980 other upstream 1421715 17145819 ~ 17156675 (-) True XLOC_002679
TCONS_00004991 other upstream 1618261 17342365 ~ 17342481 (-) True XLOC_002684
TCONS_00004997 other upstream 1769377 17493481 ~ 17501404 (-) True XLOC_002687

Expression Profile

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