RNA id: TCONS_00052016


Basic Information

Item Value
RNA id TCONS_00052016
length 5027
RNA type mRNA
GC content 0.39
exon number 14
gene id XLOC_026713
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 45283391 ~ 45308394 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTACAGCTCAGTAATGAAACATTAGCAGAAAACCTCCATGGCCAAGACCAAGAGCCCAGCCTACGATGCTGCTCTCATCCAGCCTAGCGTGGCGTTGCGTTCCTGTGCTTCTTCATCAATGGTAAGGACTCAGCTGAACTCCAGGCTTCCTCAGCATCTCGGCATGGAGGTCCGTGGGGGGGAGTCCAGCACGCCTGCTCTCAAGCCTCCGCAATCATTCAAGAAGGAGGACTTCAGCTTTGGCAAAATTTTAGGAGAGGGCTCCTTTTCAACGGTCGTGCTTGCAAAAGAGCTGGCCACCGGAAAAGAATATGCaatGAAGATTCTCGAGAAGAATCACATCAGAAAAGAGAATAAAGCACACTATGTGATCAGAGAGAAGGATATATTATCATGCATAGATCATCCCTTTTTTGTAAAGCTCTTCTTCACATTTCAAGATTCGCAGAAGTTATATTTTGCCCTCAGTTATGCAAAGAATGGAGAACTGCTTAGATACATTCGCAAAATCGGCTCATTTGATGAGACTTGCACAAGATTCTACACTGCTGAGATAGTTTGTGCACTCGAGTATTTGCACACAGTGGGGATTATCCACAGGGACCTCAAGCCAGAGAATATTTTGCTCTGCGAAGACATGCACATTCAGATTACGGATTTCGGGACAGCGAAACAGCTTTCATCGGACAGCGCTCAAACTAGAGCCAATTCTTTCGTTGGCACCGCACAGTATGTTTCTCCAGAGCTGCTGACTGAAAAATCCGCCTGCAAAAGTTCAGATCTGTGGGCAATGGGTTGCATAATCTACCAGCTGGTTGCTGGATTACCTCCGTTTAGAGCTGGGAACGAGTACTTGATTTTCCAGAAGATAATAAAGCTGGAATATGAATTCCCTGAGAAGTTCTTCCCAAAAGCTAAAGATCTGGTCCAGCGTCTGTTGTCTTTGGACCCTAGAAAGCGGCTGGGATGTGAGGAAATGGGAGGGTTCGGTCCGCTGAAAGGCCACATGTTCTTTGAGACTGTCTCATGGGAGAACCTGCCGCTTCAGACTCCACCCAAACTGACCCCTTACCTGCCAGCCATGGCTGAGGATGATGAAGACTACTATGGCAATTATGAAGATCTCCTCAGTCAGTTCAGCAGCCTGCAGGTGGTTCCCTCCAGCTCAGCGCAGATCGTCCCACCCAGACCCTGCAGCAACATCGAGCAGTACATCCACGACCTGGACAGCAACTCCTTTGAGCTGGACCTGCAGTTCTCCAGCGAGGAGAAACGACTACTCCTGCAAAAGCAAACAAGCGGCAACCCCTGGCACCAGTTTGTCGAAAATAACTTGATATATAAAATGGGACCAGTTGACAAAAGAAagGGGCTGTTTGCTCGACGCCGTCAGCTTTTACTAACTGAAGGACCGCATCTGTATTATGTGGATCCTGTTAATAAAGTACTAAAGGGGGAAATTCCGTGGTCTCCAGAATTGCGTCCTGAGGCCAAGAATTTCAAGACGTTTTTTGTCCACACGCCAAACAGGACATATTATCTAATGGATCCCAGTGGGAACGCAGACAAATGGTGCAAGAAGATTCAAGAGGTGTGGGGAACAGTATATCACTAACATCAGACATGATGGGGCATTACAGGACCACTGCAGTAAAGGCAAGCCCTCCACCATTCAGCTACCAAAACAGGACGTCCCAATGGGACTCAACTGTTCAGTTATGGGACAAGTGCACTGATAAACTGTAGAAATTATTGTcttattttgtagtttttgtcttgttttccacTATTACTGCTGGTGTTAgattacacatgcacacattttgCTTGATTAAAACCTAATTTACACTGATTTAGGTGACATTAGGATGAAAATTAACCGCGCTTATGTTTTTTAGTTCTCTCATAAATCTATCCACATCCGATGGATTACTTCAGAATTCTGGCCCCTAAAGGGATTGaatacaaatgtattcattatttatttacaatcaagtggttctaaactcaTCCTCTATTTGTTGTAAACCagtttgaatttctttttatCTGTTCAACATCAAACAAGTTCTGAATAATGGCTAAAAAAGCAGCAAATGACATCCATGGTGGAAACAAAGCATaggatggaagtcaatggctgcttccCTCCAACATTTTCcataatatcttattttgtgttcaacaaaagaaagaaactctaacaggtttggaacaagtcaggGATGAGTAAATCATGAAAAATGTTTCCTTTTTGGGTAAATTAGTCTTGTTTctgaaaaaaatacatgaaaataaagtgagtttatgctaaaaaggaaaacaaaaaaatgggAGGAAGGTGCTTTATGCATGGGccagaaaaaaaatcttgttttcgctttgtATTAAGTGTTTCTTACTTCAATCACAGattgatttatcttttttttcccaatatgatgcaatacatataaatataagcaTAATGATTTAAGAACATTctgatattttaagaaaaaaaacagacaaaatacTGAGAAATACTGAAATTCTTGAAAATTTTTTGGTTTTGGTTGTAGCTTTTTTTGTCCTATTCAAAATGTGAAGtataaaatcaatcaaatcatcAACTTGTACACTATGTATTATATAtagtcagaactattagctccCTGTTTAacgggaaaaaaaagatttatttcaacacatttccaaacataatagttttaataactcttttctaataactgatttattttatctttaccatttgtcatgatgacagcacatcatatttcactagatatttttcaagacagcttaaagtgacatttaaagccttaaataagttaattaggtgaactaggcaggtcagggtaatcaggcaagttattgtatgacgatggtttgttctgtcgactatcaagaaaaaaatatagctcaacggggctaatcattttgaccttaaaatgttttttaaaaaactaaaaactgcttttattctagcagaaataaaacaaataagactttctccagaagaaaaaaatattatcagacacactgtgaaaatttccttgctctgttaaacatcatttggaaaatatttttaaaaagtaaataaattcaaagggaggctaataattctgacttctactatatatactgtatatgacttTATGTGTGATAAACAATGTTTCGTGCATTTAAATGCATGATGCGGAGGCAAAAAACTACCTGACGTGAATCGCCATTGCTTATCCCGCTTATTCCTTAGTTATTTGCTAAGTTCTAGACAAATTTAAACTAGTTTTGCTCATTGCAGTGCAATATTTGACAGAATTGTCATCAGTTGTGACATGTTAGATCTCCTAGTTTCCGCTTTGAATCAGCAGTCACAGGTATACAGAGCCTGTGCAGAAGAGAGAGGGATTGTATGTGTGCATATGACACAGGCATATCTAATAAcagctcatagtaacatgtgTTAGCTACCTCTTTGCAAATATTTTGAGCATATTTGAGAGTTGGTTATTCCTCATCAGCTTCTGGGGAAGTTGTTGGTGTCCACGAGATTACAAAAATGAATGGAGATTCCGGCAACTGTCACTGAGTGACAATAGTTACTACTTATGTATGAGGACAGCACATTTATCTTGAACTGTGATCAAAGCTGACTGGAGCTACCTGTGACATTAGATTTTATTGCACATCTTTCAGCCAGTCAacaagaatttcaacagaccatggaTGGAATGTATAAATGCTAcctcacaaaagtcttgtcaactatccaagttttaggaacaacaaataataacttgacttctagttgatcatttggtatcagaagtggcttatatgaaaggcaaagacctcaggctgttgatgttgccatccgctCTGCAGATATCTCaaacacccccatactgaatgtaaccccaaaccatgacttttccttcaccaaacttgactgatttctgtgagaatcttgggtccatgcaggttccaataggtcttctccagtatttgtgatgattgagatgcagttcaacagatgattcatcgaaaaaaattgaccttctgccgcttttccaaatgatcaactagaagtcaagttattatttcttgctctcacaagacttttgtcaggtactgtatgtataaatgtttacTCAAATGCGTTTGGGATAGCTACTATATAGAGGACACTCAAATGATCCTACAGGTCAAGCAAATATTACAATAATTCACAAATCAACAATATATTTATTCTCTTAGTCAGCTTGTTCATGTATAATAGCTAATGAAATTATCAATTTTACTAACAGAATCACTGCTGAGCCATTCGGAGGTCGTTAAATCtgctgttgatgttgtttttttttttattatattttatttataaacattggTTTAGAGTGAAAGAAAGTACTTGATGTGGTACGTTACACAACATAAGCACTGCGAGTGAGTGAGCGAGCGGCAGCAGAAGTGACCAGCTGTCGACGGTCACGTTGTGTTGTTCGTGTCACTCTCTTGCAGTGTTTTACCTTTGGGAATTGAGCTGTGAAGAGAATCGCAACTGTAAATAAGgagatgcattttttattttctttttgttgttgtcgtACATCTAAAGGGGTGTCGATCCAGCACAGGCTAACGAAAATGCTGTAACTAAGTTTTCTCCATGCATTTTGTTCGATTGTGTATTTATAACTCGACCGATTGTTTGTCACCGAACATAACTGTGATGTACAGATGATGTATTATTCAGAAAGTAACAAGCTGTTACTTGATTTGCACCTTGTATAAGTTTATTCTTCTATAAGATTATTCGCTGTTATTTAAAGTCTAATATTCAGAGATTTGAATCGACTCCTATTCAGGGGCCAAGTGCTGTAAATATTAAGAGCCCTTTGAATGTTGAAACGAAATATTAGTGTCCTAATCAGGCCACGTTAATTATATCAGATTCAGAGTTTATTCCTTTGCACCTTTAATTGGGGGTCTCCTAATAAAAGCGTATATATGAAGAGtgata

Function

GO:

id name namespace
GO:0018105 peptidyl-serine phosphorylation biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061013-109 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in intracellular signal transduction and peptidyl-serine phosphorylation. Predicted to act upstream of or within protein phosphorylation. Human ortholog(s) of this gene implicated in prostate cancer. Orthologous to human PDPK1 (3-phosphoinositide dependent protein kinase 1).

Ensembl:

ensembl_id ENSDART00000155324

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053101 lncRNA downstream 947538 44332747 ~ 44335853 (-) True XLOC_026709
TCONS_00053100 lncRNA downstream 1159021 44111545 ~ 44124370 (-) True XLOC_026708
TCONS_00051995 lncRNA downstream 1393948 43878456 ~ 43889443 (-) True XLOC_026703
TCONS_00051994 lncRNA downstream 1408262 43866785 ~ 43875129 (-) True XLOC_026702
TCONS_00052486 lncRNA downstream 1596922 43661692 ~ 43686469 (-) True XLOC_026698
TCONS_00053102 lncRNA upstream 231392 45539786 ~ 45543451 (-) True XLOC_026716
TCONS_00052022 lncRNA upstream 467986 45776380 ~ 45778109 (-) True XLOC_026717
TCONS_00052487 lncRNA upstream 523683 45832077 ~ 45834382 (-) False XLOC_026719
TCONS_00052024 lncRNA upstream 525446 45833840 ~ 45843700 (-) True XLOC_026719
TCONS_00052488 lncRNA upstream 844733 46153127 ~ 46217473 (-) True XLOC_026722
TCONS_00052015 mRNA downstream 2041 45261387 ~ 45281350 (-) True XLOC_026712
TCONS_00052014 mRNA downstream 32467 45195219 ~ 45250924 (-) True XLOC_026711
TCONS_00052013 mRNA downstream 37784 45195219 ~ 45245607 (-) False XLOC_026711
TCONS_00052012 mRNA downstream 37784 45195219 ~ 45245607 (-) False XLOC_026711
TCONS_00052011 mRNA downstream 530066 44541322 ~ 44753325 (-) True XLOC_026710
TCONS_00052018 mRNA upstream 7083 45315477 ~ 45326897 (-) True XLOC_026714
TCONS_00052019 mRNA upstream 35388 45343782 ~ 45361573 (-) True XLOC_026715
TCONS_00052020 mRNA upstream 467976 45776370 ~ 45778123 (-) False XLOC_026717
TCONS_00052021 mRNA upstream 467983 45776377 ~ 45777226 (-) False XLOC_026717
TCONS_00052023 mRNA upstream 510232 45818626 ~ 45822914 (-) True XLOC_026718
TCONS_00052007 other downstream 1189165 44081623 ~ 44094226 (-) False XLOC_026707
TCONS_00051981 other downstream 2417191 42866083 ~ 42866200 (-) True XLOC_026691
TCONS_00051964 other downstream 3971248 41312022 ~ 41312143 (-) True XLOC_026680
TCONS_00051939 other downstream 4753612 40526882 ~ 40529779 (-) False XLOC_026667
TCONS_00051938 other downstream 4753613 40526879 ~ 40529778 (-) False XLOC_026667
TCONS_00052055 other upstream 1886743 47195137 ~ 47195234 (-) True XLOC_026732
TCONS_00052070 other upstream 3769368 49077762 ~ 49077879 (-) True XLOC_026748
TCONS_00052082 other upstream 4506803 49815197 ~ 49815287 (-) False XLOC_026760
TCONS_00052087 other upstream 4795677 50104071 ~ 50117962 (-) True XLOC_026764
TCONS_00052109 other upstream 6239739 51548133 ~ 51548250 (-) True XLOC_026779

Expression Profile

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