RNA id: TCONS_00053102



Basic Information


Item Value
RNA id TCONS_00053102
length 380
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id XLOC_026716
representative True

Chromosome Information


Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 45539786 ~ 45543451 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


AATTTCTAATAGTTGGAATCTCTTTATTGAATTCAAAGTGCACGCAGCCACAcacgtgcatgcacacacacacacacacacgcacaccataTACACCATTACTGGAGTCACAAAAGAGACGGAGAGTTGCTGACAGTATCACATTCTTGAGCATGTTTGAAGGGGCGCAGTAATATCAGTGTTTGCGGCGTGTTTCAGCAGGCTTTGGCCTTCATTCGTTTGCGAGTGGCTCATTTCTGGTGGCTTTCACTCAGCAGGAGGTGAACAGCACATGAGAAGTGTGAAGGTCAGAAGaagaagagagagggagagatgctGgACAACagtgaaaaatacatttaaaagtgttTGCATTTGAAGAGTGAACATAGTACAACAGG

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00053101 lncRNA downstream 1203933 44332747 ~ 44335853 (-) True XLOC_026709
TCONS_00053100 lncRNA downstream 1415416 44111545 ~ 44124370 (-) True XLOC_026708
TCONS_00051995 lncRNA downstream 1650343 43878456 ~ 43889443 (-) True XLOC_026703
TCONS_00051994 lncRNA downstream 1664657 43866785 ~ 43875129 (-) True XLOC_026702
TCONS_00052486 lncRNA downstream 1853317 43661692 ~ 43686469 (-) True XLOC_026698
TCONS_00052022 lncRNA upstream 232929 45776380 ~ 45778109 (-) True XLOC_026717
TCONS_00052487 lncRNA upstream 288626 45832077 ~ 45834382 (-) False XLOC_026719
TCONS_00052024 lncRNA upstream 290389 45833840 ~ 45843700 (-) True XLOC_026719
TCONS_00052488 lncRNA upstream 609676 46153127 ~ 46217473 (-) True XLOC_026722
TCONS_00052028 lncRNA upstream 681138 46224589 ~ 46225847 (-) False XLOC_026723
TCONS_00052019 mRNA downstream 178213 45343782 ~ 45361573 (-) True XLOC_026715
TCONS_00052018 mRNA downstream 212889 45315477 ~ 45326897 (-) True XLOC_026714
TCONS_00052016 mRNA downstream 231392 45283391 ~ 45308394 (-) False XLOC_026713
TCONS_00052017 mRNA downstream 241299 45286086 ~ 45298487 (-) True XLOC_026713
TCONS_00052015 mRNA downstream 258436 45261387 ~ 45281350 (-) True XLOC_026712
TCONS_00052020 mRNA upstream 232919 45776370 ~ 45778123 (-) False XLOC_026717
TCONS_00052021 mRNA upstream 232926 45776377 ~ 45777226 (-) False XLOC_026717
TCONS_00052023 mRNA upstream 275175 45818626 ~ 45822914 (-) True XLOC_026718
TCONS_00052025 mRNA upstream 301556 45845007 ~ 45848257 (-) False XLOC_026720
TCONS_00052026 mRNA upstream 302748 45846199 ~ 45848043 (-) True XLOC_026720
TCONS_00052007 other downstream 1445560 44081623 ~ 44094226 (-) False XLOC_026707
TCONS_00051981 other downstream 2673586 42866083 ~ 42866200 (-) True XLOC_026691
TCONS_00051964 other downstream 4227643 41312022 ~ 41312143 (-) True XLOC_026680
TCONS_00051939 other downstream 5010007 40526882 ~ 40529779 (-) False XLOC_026667
TCONS_00051938 other downstream 5010008 40526879 ~ 40529778 (-) False XLOC_026667
TCONS_00052055 other upstream 1651686 47195137 ~ 47195234 (-) True XLOC_026732
TCONS_00052070 other upstream 3534311 49077762 ~ 49077879 (-) True XLOC_026748
TCONS_00052082 other upstream 4271746 49815197 ~ 49815287 (-) False XLOC_026760
TCONS_00052087 other upstream 4560620 50104071 ~ 50117962 (-) True XLOC_026764
TCONS_00052109 other upstream 6004682 51548133 ~ 51548250 (-) True XLOC_026779

Expression Profile


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