RNA id: TU2085125


Basic Information

Item Value
RNA id TU2085125
length 2207
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G1821711
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 1302815 ~ 1305489 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTATTCCTTTTTATTGTAGATAAATGACATTGCTGCTCCCAGAAACAAGCAGAGATCCAGTAACATACTAACAACATTTTACACTAATAAACCATTATCCAACAACTCCAGGATGATGATTTAACATGCTGCGGGACAGAAAATAAAATCTTTACAAAAATATGTTACACAAAGAATACAATACTACCTTACATTGATAAAAGCattttaaatatattatttttagTAATCAAGTCAATAATTTGAATGCACTTTTCAATGTAAAATGAACAATTCCTTTAGGACTGTTCACTAATCTTACATTAACAAAATGTTTGTCAAACCAACAGACTACATTTCCCATAAGCCTCTCTGTCCTCACATACATTAGAAATGTCTTCTTACCGAGTCACATGGACATCACTTCAGATAAATGAAACGGGACTAAGTTATACATTTGCAGTTTTACACAAAAATTGGCATATATTTTTCCTCGATGAGAGTAGAAATATGTCTTTGAAGTGATGTTTTTATTGTTAAGTGAGTAAAACATGCCAGAAGTCAATTCTACAGCTGGTCTTCTAGACTGAGTGAACAGTGATCAGATAACAGCTTCTGTGGGTAAACCTCTCTACTGGTCAGGAAGGATACAGAGAGCTCTTCTCTGTCGGACACAATCTAGTTGAGCTCAACGTTGGACATCATGTCTGTAtgccaaatggctccctatatagACCACTACTATGGGCCCTAATCCAAAGTAaggtactaaatagggaatagggagcagtTTGGGACACAGGCCATTATTCAAAGTTATTATGTTGCTGTAAGAACACCCAGTTAAGCTGATCCATTATTGACTTGGACTAAAGAACATGGGTAACGCTCTTTCgtttttttacccccccccccccccaataccaCGTTTAATTTCAAATGCATGTTGAGAACACGAACTGCCTTTTGGGATTAAGAAGGGTGAATTACTCTCGATTAGATCAACGGCCTAAAACCAACAACACCGAACATCAACATGTTGACGGTGACCTGTcagagtctgcatcccaaatggaacactagaTAGTGcataggtcctggtcaacagtagtgtactatatagggaatagggtgcatgggccctggtaaaaagtagtgtactatatagggaatagggtgcatgggccctgttcaacagtagtgcactatatagggaatagggtgcatgggccctggtcaacagtagtgtactatatagggaatagggtgccatttgggatgcatcctggaCAACGGCTGTGTTCGTTTTCCTTCTTCACGTTCTGCTGTGTTTCTCGTCACACGTCTCCTCTCTCACGTCCAATGAGGTTGTGTTTTAATATGTACACAATCACTGTTTCAGTGAGCCTAATACACATTTATATTGCTTTGGAAAACACATCTCGTCATGGTATACAGTAAGCTTGAATAGGTAACATGTTTGGCATTTCAGATCAGTACTGTAGGGGGTATGACTGGAGAAGATGGCTCCAGGTATCTCAACAGTAGGGGGTAGGACTGTGGAGAAGATGGCTCCAGGTACCTCAACAGTAGGGGGTAGGACTGGAGATGGCTCCAGGTACCTCAACAGTAGGGGGTAGGACTGTGGAGAAGATGGCTCCAGGTATCTCAACAGTAGGGGGTAGGACTGGAGAAGATGTCTCCAAGTACCTCTACAGTAGGTATGCTTTAGTATGTCCCTGTGGAAGTCATCCTATAAATATAGTTCTGGTATAATGACATCCTCTCACCTCTGATCCCATGGTGCTTCCCTCTTCCTTCTGATTGGATGTTGATGTTTGTGTGTCTAATGAGCTAATAACAGAAGCCTGCATAGTCGGTCCCATAGAGCAGGCAGGAGGACGGGTGACGGACAGACTGACAGCTGCTTGGAGTcaaaaaataaaaagtagtaTCTTatatcccaaacggcacccttttcctatgtagtgcactactttagactagagccctatgggaccctggtctaaagtagtgccctacatagggaatagtgtgtcatttggtTCTAAAGCCTAAGTGATTCATCTGTAGTAGTACATGCAGTCCAATGTGGTTgttcctcgtctctctctccagtaAACGTAGACGTCCACTGGTCTTAAATCTTCATGCCCAGCTTGGCTTTCTGTGGAAAAACGATACGTTAAATGTTCAGATATGCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2085090 lncRNA downstream 43012 1259387 ~ 1259803 (-) True G1821687
TU2085082 lncRNA downstream 72776 1229396 ~ 1230039 (-) True G1821681
TU2084964 lncRNA downstream 183354 1119018 ~ 1119461 (-) True G1821595
TU2084963 lncRNA downstream 184075 1117118 ~ 1118740 (-) True G1821594
TU2084961 lncRNA downstream 185880 1116578 ~ 1116935 (-) True G1821593
TU2085139 lncRNA upstream 4715 1310002 ~ 1310480 (-) True G1821714
TU2085140 lncRNA upstream 5755 1311042 ~ 1311273 (-) True G1821715
TU2085141 lncRNA upstream 7242 1312529 ~ 1312753 (-) True G1821716
TU2085142 lncRNA upstream 8653 1313940 ~ 1314170 (-) True G1821717
TU2085144 lncRNA upstream 13996 1319283 ~ 1319571 (-) True G1821719
XM_036960832.1 mRNA downstream 410238 844436 ~ 892577 (-) True LOC118943914
XM_036960821.1 mRNA upstream 260 1305547 ~ 1344732 (-) False LOC110515341
XM_036960822.1 mRNA upstream 260 1305547 ~ 1344732 (-) True LOC110515341
XM_036960121.1 mRNA upstream 47694 1352981 ~ 1486612 (-) False LOC110517589
XM_036960122.1 mRNA upstream 47694 1352981 ~ 1486612 (-) False LOC110517589
XM_036960123.1 mRNA upstream 47694 1352981 ~ 1486612 (-) False LOC110517589
TU2085083 other downstream 70548 1231836 ~ 1232267 (-) True G1821682
TU2083978 other downstream 1279331 22558 ~ 23484 (-) True G1820880
TU2083976 other downstream 1282573 19768 ~ 20242 (-) True G1820878
TU2085328 other upstream 94328 1399615 ~ 1450022 (-) True LOC110517589
TU2085396 other upstream 197664 1502951 ~ 1513441 (-) True G1821923
TU2085536 other upstream 458860 1764147 ~ 1765537 (-) False G1822025
TU2085615 other upstream 582921 1888208 ~ 1891148 (-) False G1822081
TU2085612 other upstream 584044 1889331 ~ 1891148 (-) False G1822081

Expression Profile